Query= MSMg01no138_b23.b1 MSMg01no138_b23.b1 CHROMAT_FILE:
MSMg01no138_b23.b1 PHD_FILE: MSMg01no138_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:03 2005
(613 letters)
>mm_chr1_97980884_97981897
Length = 1014
Score = 1172 bits (606), Expect = 0.0
Identities = 612/614 (99%), Gaps = 1/614 (0%)
Strand = Plus / Plus
Query: 1 ggcacaaccataacctatgtgaagagttactgacctaaaagcttcaggtaggagaaaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggcacaaccataacctatgtgaagagttactgacctaaaagcttcaggtaggagaaaaat 260
Query: 61 cttgccaggaaaattgattttactagtaatacctgtgggttcttaggtttctttggcatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgccaggaaaattgattttactagtaatacctgtgggttcttaggtttctttggcatt 320
Query: 121 cagaaagcttcaaataaagagatcaacattctagcctctgtttttatttgccaatttgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaaagcttcaaataaagagatcaacattctagcctctgtttttatttgccaatttgaa 380
Query: 181 aatgcagggaactgaccttcagatggaatttttcatctgaaccctttccccagtcttcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgcagggaactgaccttcagatggaatttttcatctgaaccctttccccagtcttcag 440
Query: 241 tgccgtgtatacacagactccacacatgtggaaa-ccttctgtctttcatttgtgttgtg 299
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 tgccgtgtatacacagactccacacatgtggaaagccttctgtctttcatttgtgttgtg 500
Query: 300 gcaaatattaaaaatgactgacaggtttcctacattactgcaggcaactctctgccctgg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaaatattaaaaatgactgacaggtttcctacattactgcaggcaactctctgccctgg 560
Query: 360 tgtggtcccgtgcctctacctctagattagcctcatcagagacccattgcagtctaccca 419
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 tgtggtcccgtgcctctacctctagactagcctcatcagagacccattgcagtctaccca 620
Query: 420 gctcctttttgcttgactcatagccacctgtaccttcttacccattaacccctttgttgg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctcctttttgcttgactcatagccacctgtaccttcttacccattaacccctttgttgg 680
Query: 480 tggtcacacatcacggtaacccagtaaaataaaactcttaaagtttataattaaccagtc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tggtcacacatcacggtaacccagtaaaataaaactcttaaagtttataattaaccagtc 740
Query: 540 agatctatgcatcaatacattctcaattcacaagatgcacatacaataatttcagagcca 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agatctatgcatcaatacattctcaattcacaagatgcacatacaataatttcagagcca 800
Query: 600 actgagaatgataa 613
||||||||||||||
Sbjct: 801 actgagaatgataa 814
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1014
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1004
Effective search space: 605412
Effective search space used: 605412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no138_b23.g1 MSMg01no138_b23.g1 CHROMAT_FILE:
MSMg01no138_b23.g1 PHD_FILE: MSMg01no138_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:03 2005
(615 letters)
>mm_chr1_98171913_98172928
Length = 1016
Score = 1083 bits (560), Expect = 0.0
Identities = 602/616 (97%), Gaps = 1/616 (0%)
Strand = Plus / Minus
Query: 1 cattatgttttaaattattggtttgtgactaatttgctctgacttaatattcaattacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 cattatgttttaaattattggtttgtgactaatttgctctgacttaatattcaattacct 757
Query: 61 gccattttccagagtaagattttctctgtgagaagggctcacaggcacagggaatcaatt 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 756 gccattttccagagtaagattttctctgtgagaagggcacacaggcacagggaatcaatt 697
Query: 121 tttatttagatactaataaaaccaaaattttctttcaacaaataacatatataataggat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 696 tttatttagatactaataaaaccaaaattttctttcaacaaataacatatataatagaat 637
Query: 181 atatataaaatgaaaacacacatacattttcattaagtttgcatttataacagtttgctt 240
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 636 atatacaaaatgaaaacacacatacattttcattaagtttgcattcataacagtttgctt 577
Query: 241 taatgtatataagaataaacaaattatttctactttctacatttgagtctatttttttt- 299
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 576 taatgcatataagaataaacaaattacttctactttctacatttgagtctatttttttta 517
Query: 300 atttaatatcagaaattaagctgtcaaccaatttatttagagatccaagcattaaattta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 atttaatatcagaaattaagctgtcaaccaatttatttagagatccaagcattaaattta 457
Query: 360 tttagagatccaaggctttctaatctaatgagttatacatttgagagtcactattgaact 419
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 456 tttagagatccaaggctttctaatctaatgagctatacatttgagagtcacaattgaact 397
Query: 420 gggagctcaagctgctaatgtcacttacaaagtttccagctcaaacttatattttggaca 479
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gagagctcaagctgctaatgtcacttacaaagtttccagctcaaacttatattttggaca 337
Query: 480 tagttgtaccaagttagttttgtttaataataagaatttatacaataccacatatttata 539
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tagttgtaccaagttagtatcgtttaataataagaatttatacaataccacatatttata 277
Query: 540 tgttatatgtttatggaactataatttaaataatattttgtatgagaactaatgatttta 599
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 276 tgttatatatttatggaactataatttaaataatattttgtatgagaactaataatttta 217
Query: 600 ccatactttcaatatg 615
||||||||||||||||
Sbjct: 216 ccatactttcaatatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1016
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1006
Effective search space: 608630
Effective search space used: 608630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
