Query= MSMg01no138_c04.b1 MSMg01no138_c04.b1 CHROMAT_FILE:
MSMg01no138_c04.b1 PHD_FILE: MSMg01no138_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:04 2005
(666 letters)
>mm_chr1_62567035_62568100
Length = 1066
Score = 1257 bits (650), Expect = 0.0
Identities = 659/662 (99%)
Strand = Plus / Plus
Query: 5 gaattcatttcactgtcagctactgagttccatggttggcagcatagtgcctaattgtcc 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttcactgtgagctactgagttccatggttggcagcatagtgcctaattgtcc 264
Query: 65 ttcttctttggtatctgctgactcattcatttttcatatctgtgtggcaagctgcacact 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcttctttggtatctgctgactcattcatttttcatatctgtgtggcaagctgcacact 324
Query: 125 cctccctggcagatcttcacaccaccatctcctcccctgagtggggcactagctatttgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctccctggcagatcttcacaccaccatctcctcccctgagtggggcactagctatttgt 384
Query: 185 taattaagatcctgtgactgcttttcctttaaaatgccatggaaaagaaaagtccttgtc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taattaagatcctgtgactgcttttcctttaaaatgccatggaaaagaaaagtccttgtc 444
Query: 245 aatctctaacagagtagtttcatttgttttgtgttgtgttgctttaactttctgacccga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatctctaacagagtagtttcatttgttttgtgttgtgttgctttaactttctgacccga 504
Query: 305 gatttggcagccagtacctttcccctaatgggaaatttgtcactgtattaatggtgtgtc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gatttggcagccagtacctttcccctaatgggaaatttgtcactgtattaatggtgtgtc 564
Query: 365 aaccatcatcaccagctcatggcagataaataagagctctgcttatagaaaatcttaaac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaccatcatcaccagctcatggcagataaataagagctctgcttatagaaaatcttaaac 624
Query: 425 atttcaatgcccctcccattgtctcaatcctctgtggtccttggtgtacagcatccaatc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atttcaatgcccctcccattgtctcaatcctctgtggtccttggtgtacagcatccaatc 684
Query: 485 atttgggagacaggcaggagtagaagctgagttttgccgataatgtggcctgctgttaga 544
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 685 atttgggagacaggcaggagtagaagctgagttttgctgataatgtggcctgctgttaga 744
Query: 545 tttgaattatatgcataaacacatatgcagaaaaatcacaaaatgcaagaaaaccccata 604
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tttgaattatatgcatacacacatatgcagaaaaatcacaaaatgcaagaaaaccccata 804
Query: 605 taggtcaagggttcatcttgcaggttcattcttcaaggatgacctaggtgcaaactctgt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 taggtcaagggttcatcttgcaggttcattcttcaaggatgacctaggtgcaaactctgt 864
Query: 665 ta 666
||
Sbjct: 865 ta 866
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no138_c04.g1 MSMg01no138_c04.g1 CHROMAT_FILE:
MSMg01no138_c04.g1 PHD_FILE: MSMg01no138_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:04 2005
(569 letters)
>mm_chr1_62711056_62712024
Length = 969
Score = 934 bits (483), Expect = 0.0
Identities = 501/515 (97%), Gaps = 13/515 (2%)
Strand = Plus / Minus
Query: 55 caaagatcaagtcctttcagctgttcagtctcctcccatttgacttggccccactgccat 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969 caaagatcaagtcctttcagctgttcagtctcctcccatttgacttggccccactgccat 910
Query: 115 ccactgacatttgaaatgtgtctatttgaaaagaaaaggagaaaagaggacaaagaggag 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 ccactgacatttgaaatgtgtctatttgaaaagaaaaggagaaaagaggacaaagaggag 850
Query: 175 gggaaaaattatgccggagatgttacatcctgctaggcaagaggaaggagtggttggctt 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 gggaaaaattatgccggagatgttacatcctgctaggcaagaggaaggagtggttggctt 790
Query: 235 tgcagagcctggagggtgtggtgtgccggctgtgtgtgcttttccttttgtcttggcctt 294
|||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 789 tgcagagcctggagggtgtg-------------gtgtgcttttccttttgtcttggcctt 743
Query: 295 ttcctgtgtttctgccctgcatggccacatttgctagtgtgacgataaggatgacttaag 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ttcctgtgtttctgccctgcatggccacatttgctagtgtgacgataaggatgacttaag 683
Query: 355 ctgtctgagtttatccaggatgctagggggaggggcctgggaaatgaatggaaggagccc 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ctgtctgagtttatccaggatgctagggggaggggcctgggaaatgaatggaaggagccc 623
Query: 415 accctctgctcagccacagggcagggctttgatgggtgtccccaggctctgggctctggc 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 accctctgctcagccacagggcagggctttgatgggtgtccccaggctctgggctctggc 563
Query: 475 tggttgggtaagggaagccactgggggaagttgctggctgagacagaaaacagacacagc 534
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 562 tggttgggtaagggaagccactgggggaagttgctggctgagacagaaaacagacacatc 503
Query: 535 cacacgggaaggatggccttgacctggcctgcaga 569
|||||||||||||||||||||||||||||||||||
Sbjct: 502 cacacgggaaggatggccttgacctggcctgcaga 468
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
