Query= MSMg01no138_f17.b1 MSMg01no138_f17.b1 CHROMAT_FILE:
MSMg01no138_f17.b1 PHD_FILE: MSMg01no138_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:22 2005
(546 letters)
>mm_chr1_77825659_77826604
Length = 946
Score = 965 bits (499), Expect = 0.0
Identities = 533/547 (97%), Gaps = 5/547 (0%)
Strand = Plus / Plus
Query: 5 gaattcttaggctagccttgaccctgtagtgatttctacatctgcctgagctatatagaa 64
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 205 gaattcttaggctagccttgaccctgtagtgagttctacatctgcctgagctatacagaa 264
Query: 65 agatgctgtctccaaccaaggaaagaagcaaacaaactttaaaacttctagaaaaaaata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agatgctgtctccaaccaaggaaagaagcaaacaaactttaaaacttctagaaaaaaata 324
Query: 125 ttgacaactctatgaccttcagaaaagcaaagtcaccgaaaaggcttgaaaaagaaaaa- 183
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 325 ttgaccactctatgaccttcagaaaagcaaagtcactgaaaaggcttgaaaaagaaaaaa 384
Query: 184 ----aaaaaagaaaagaaagaaaacattggtaaagtttgttgtgtaaaatgtgccccaaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaagaaaaaagaaaagaaagaaaacattggtaaagtttgttgtgtaaaatgtgccccaaa 444
Query: 240 agacacccaaaacaatataggctatagccattactcttggttgcctaacataactagatg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agacacccaaaacaatataggctatagccattactcttggttgcctaacataactagatg 504
Query: 300 ctaggaccttatcctgaagccagcatactatgttttaattgttttagatgtatatgtatt 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttaggaccttatcctgaagccagcatactatgttttaattgttttagatgtatatgtatt 564
Query: 360 gatgttttgcctccatgcatgtgtacaatgtttacatgcctggtgatcataccatggcat 419
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gatgttttgcctacatgcatgtgtacaatgtttacatgcctggtgatcataccatggcat 624
Query: 420 ctagaagatgatattgaatcctctagaactgaagttaggaatggttatgagccaccatga 479
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctagaagatgatactgaatcctctagaactgaagttaggaatggttatgagccaccatga 684
Query: 480 agctgggaccaaacccaggctctcagcaagaagaacacgtactttgaactgctgagccat 539
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 685 agctgggaccaaacccaggctctcagcaagaggaacacatactttgaactgctgagccat 744
Query: 540 cactcca 546
|||||||
Sbjct: 745 cactcca 751
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no138_f17.g1 MSMg01no138_f17.g1 CHROMAT_FILE:
MSMg01no138_f17.g1 PHD_FILE: MSMg01no138_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:22 2005
(404 letters)
>mm_chr1_77982366_77983170
Length = 805
Score = 719 bits (372), Expect = 0.0
Identities = 397/406 (97%), Gaps = 3/406 (0%)
Strand = Plus / Minus
Query: 1 tctagatggtcaaagggaacggatgggaggatgaggtggggggtcaggttaataggagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tctagatggtcaaagggaacggatgggaggatgaggtggggggtcaggttaataggagaa 546
Query: 61 tatgttcagcataaagctataccactatgaagatcgataaataaaagagagagagatgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tatgttcagcataaagctataccactatgaagatcgataaataaaagagagagagatgtg 486
Query: 121 ccacagggagaccggggtaggatgctgctattagactgggattctgtttcttcgtcttgt 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 485 ccacagggagactggggtaggatgctgctattagactgggattctgtttcttcatcttgt 426
Query: 181 atatatatgaaccagatccagggcaactttaatccttctgggtatcccttaactgtagca 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 atatatctgaaccagatccagggcaactttaatccttctgggtatcccttaactgtagca 366
Query: 241 tcagtcagatatcctgctctctccatctctgttatggtcaggactgggtaagtagcaaga 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tcagtcagataacctgctctctccatctctgttatggtcaggactgggtaagtagcaaga 306
Query: 301 gataaatgtgccc--agagtaacccacgcaggatggcattcatctcaggtgcacatggca 358
||||||||| ||| | |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 305 gataaatgttccccca-agtaaccctcgcaggatggcattcatctcaggtgcacatggca 247
Query: 359 tagaagtgaggggaggtaaagtgtgaaggcccatgctccctccaga 404
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tagaagtgaggggaggtaaagtgtgaaggcccatgctccctccaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 805
Length adjustment: 9
Effective length of query: 395
Effective length of database: 796
Effective search space: 314420
Effective search space used: 314420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|