BAC Information

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BAC

Clone NameMSMg01-138F17
Chromosome1 (Build37)
Map Location 77,825,863 - 77,982,970
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039137, Tfdp1-ps, Epha4, LOC100039330
Downstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260, EG545332
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-138F17.T7 (MSMg01no138_f17.b1)MSMg01-138F17.TJ (MSMg01no138_f17.g1)
ACCAG344044AG344045
length694696
length of high quality
(start - end)
546 (57 - 602)404 (85 - 488)
definitionCHROMAT_FILE: MSMg01no138_f17.b1 PHD_FILE: MSMg01no138_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:22 2005CHROMAT_FILE: MSMg01no138_f17.g1 PHD_FILE: MSMg01no138_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,825,863 - 77,826,409)(77,982,566 - 77,982,970)
sequence
CTTTCTCTNNCATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXGCCGCGGAATTCTTAGGCTAGCCTTGACCCTGTAGTGATTTCTACA
TCTGCCTGAGCTATATAGAAAGATGCTGTCTCCAACCAAGGAAAGAAGCA
AACAAACTTTAAAACTTCTAGAAAAAAATATTGACAACTCTATGACCTTC
AGAAAAGCAAAGTCACCGAAAAGGCTTGAAAAAGAAAAAAAAAAAGAAAA
GAAAGAAAACATTGGTAAAGTTTGTTGTGTAAAATGTGCCCCAAAAGACA
CCCAAAACAATATAGGCTATAGCCATTACTCTTGGTTGCCTAACATAACT
AGATGCTAGGACCTTATCCTGAAGCCAGCATACTATGTTTTAATTGTTTT
AGATGTATATGTATTGATGTTTTGCCTCCATGCATGTGTACAATGTTTAC
ATGCCTGGTGATCATACCATGGCATCTAGAAGATGATATTGAATCCTCTA
GAACTGAAGTTAGGAATGGTTATGAGCCACCATGAAGCTGGGACCAAACC
CAGGCTCTCAGCAAGAAGAACACGTACTTTGAACTGCTGAGCCATCACTC
CAGCTCCCAAGCATACTTTAACTGCAGGCTATAGATAAGTCCATTCTGAT
CCCACCCAGGAACTTTCTTTCTGATACCTAGCTTGCATAGTACT
ATGTCTTTTNTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTAGATGGTCAAAGG
GAACGGATGGGAGGATGAGGTGGGGGGTCAGGTTAATAGGAGAATATGTT
CAGCATAAAGCTATACCACTATGAAGATCGATAAATAAAAGAGAGAGAGA
TGTGCCACAGGGAGACCGGGGTAGGATGCTGCTATTAGACTGGGATTCTG
TTTCTTCGTCTTGTATATATATGAACCAGATCCAGGGCAACTTTAATCCT
TCTGGGTATCCCTTAACTGTAGCATCAGTCAGATATCCTGCTCTCTCCAT
CTCTGTTATGGTCAGGACTGGGTAAGTAGCAAGAGATAAATGTGCCCAGA
GTAACCCACGCAGGATGGCATTCATCTCAGGTGCACATGGCATAGAAGTG
AGGGGAGGTAAAGTGTGAAGGCCCATGCTCCCTCCAGAGGGCAGACCACC
CAGCTATTCTGAGCATTTGTACAGAAAGGCTAATAATCTACAATACACAC
ACACTCACACACTCACTACTACTCACTCACCCATGCATATGTATATATAA
TAATCACTTTGAGTTTTATGGATAGATTGCCTACATCCATCACAAGATAT
AAGCCCTGAAGTAAAATAAAAGTCTGCCCTCCGATTGCTTAGAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no138_f17.b1 MSMg01no138_f17.b1 CHROMAT_FILE:
MSMg01no138_f17.b1 PHD_FILE: MSMg01no138_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:22 2005
         (546 letters)



>mm_chr1_77825659_77826604
          Length = 946

 Score =  965 bits (499), Expect = 0.0
 Identities = 533/547 (97%), Gaps = 5/547 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttaggctagccttgaccctgtagtgatttctacatctgcctgagctatatagaa 64
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 205 gaattcttaggctagccttgaccctgtagtgagttctacatctgcctgagctatacagaa 264

                                                                       
Query: 65  agatgctgtctccaaccaaggaaagaagcaaacaaactttaaaacttctagaaaaaaata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agatgctgtctccaaccaaggaaagaagcaaacaaactttaaaacttctagaaaaaaata 324

                                                                       
Query: 125 ttgacaactctatgaccttcagaaaagcaaagtcaccgaaaaggcttgaaaaagaaaaa- 183
           ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 325 ttgaccactctatgaccttcagaaaagcaaagtcactgaaaaggcttgaaaaagaaaaaa 384

                                                                       
Query: 184 ----aaaaaagaaaagaaagaaaacattggtaaagtttgttgtgtaaaatgtgccccaaa 239
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaagaaaaaagaaaagaaagaaaacattggtaaagtttgttgtgtaaaatgtgccccaaa 444

                                                                       
Query: 240 agacacccaaaacaatataggctatagccattactcttggttgcctaacataactagatg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agacacccaaaacaatataggctatagccattactcttggttgcctaacataactagatg 504

                                                                       
Query: 300 ctaggaccttatcctgaagccagcatactatgttttaattgttttagatgtatatgtatt 359
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttaggaccttatcctgaagccagcatactatgttttaattgttttagatgtatatgtatt 564

                                                                       
Query: 360 gatgttttgcctccatgcatgtgtacaatgtttacatgcctggtgatcataccatggcat 419
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gatgttttgcctacatgcatgtgtacaatgtttacatgcctggtgatcataccatggcat 624

                                                                       
Query: 420 ctagaagatgatattgaatcctctagaactgaagttaggaatggttatgagccaccatga 479
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctagaagatgatactgaatcctctagaactgaagttaggaatggttatgagccaccatga 684

                                                                       
Query: 480 agctgggaccaaacccaggctctcagcaagaagaacacgtactttgaactgctgagccat 539
           ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 685 agctgggaccaaacccaggctctcagcaagaggaacacatactttgaactgctgagccat 744

                  
Query: 540 cactcca 546
           |||||||
Sbjct: 745 cactcca 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space:   501696
Effective search space used:   501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no138_f17.g1 MSMg01no138_f17.g1 CHROMAT_FILE:
MSMg01no138_f17.g1 PHD_FILE: MSMg01no138_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:22 2005
         (404 letters)



>mm_chr1_77982366_77983170
          Length = 805

 Score =  719 bits (372), Expect = 0.0
 Identities = 397/406 (97%), Gaps = 3/406 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctagatggtcaaagggaacggatgggaggatgaggtggggggtcaggttaataggagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tctagatggtcaaagggaacggatgggaggatgaggtggggggtcaggttaataggagaa 546

                                                                       
Query: 61  tatgttcagcataaagctataccactatgaagatcgataaataaaagagagagagatgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tatgttcagcataaagctataccactatgaagatcgataaataaaagagagagagatgtg 486

                                                                       
Query: 121 ccacagggagaccggggtaggatgctgctattagactgggattctgtttcttcgtcttgt 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 485 ccacagggagactggggtaggatgctgctattagactgggattctgtttcttcatcttgt 426

                                                                       
Query: 181 atatatatgaaccagatccagggcaactttaatccttctgggtatcccttaactgtagca 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 atatatctgaaccagatccagggcaactttaatccttctgggtatcccttaactgtagca 366

                                                                       
Query: 241 tcagtcagatatcctgctctctccatctctgttatggtcaggactgggtaagtagcaaga 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tcagtcagataacctgctctctccatctctgttatggtcaggactgggtaagtagcaaga 306

                                                                       
Query: 301 gataaatgtgccc--agagtaacccacgcaggatggcattcatctcaggtgcacatggca 358
           ||||||||| |||  | |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 305 gataaatgttccccca-agtaaccctcgcaggatggcattcatctcaggtgcacatggca 247

                                                         
Query: 359 tagaagtgaggggaggtaaagtgtgaaggcccatgctccctccaga 404
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tagaagtgaggggaggtaaagtgtgaaggcccatgctccctccaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 805
Length adjustment: 9
Effective length of query: 395
Effective length of database: 796
Effective search space:   314420
Effective search space used:   314420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)