Query= MSMg01no139_c10.b1 MSMg01no139_c10.b1 CHROMAT_FILE:
MSMg01no139_c10.b1 PHD_FILE: MSMg01no139_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:27 2005
(566 letters)
>mm_chr1_138426029_138426994
Length = 966
Score = 957 bits (495), Expect = 0.0
Identities = 544/565 (96%), Gaps = 11/565 (1%)
Strand = Plus / Minus
Query: 11 ggaattcactcatccttatatcagttactgtggaaaccagtgttggtagatatactatta 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 ggaattcactcatccttatatcagttactgtggaaaccagtgttggtagatatactatta 843
Query: 71 aacacgtcatgcgtcaagggctgtaatacacatacattggcatctgcttgcaccaggtat 130
||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 842 aacacatcatgcttcaagggctgtaatacaca-acattggcatctgcttgcaccaggtat 784
Query: 131 -attattatttgagacagggtttctctgtgtagaccaggctgtcctcaagctcagagatc 189
| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 783 ga-tcttatttgagacagggtttctctgtgtagaccaggctgtcctcgagctcagagatc 725
Query: 190 tgcctgcctctgcctcctgagtgctgagactaaaggcatgttgtttatgtaacaaggttt 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 tgcctgcctctgcctcctgagtgctgagactaaaggcatgttgtttatgtaacaaggttt 665
Query: 250 tgctgctcgttacagaagggagactaccattggcttatcatctgctactgggcaagcgcc 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tgctgctcgttacagaagggagactaccattggcttatcatctgctactgggcaagcgcc 605
Query: 310 ctccttcctctctgtcacccagtgtccaaggacatagtccatgaagtggtgggacttttc 369
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 604 ctccttcctctctgtcacccagtgcccacggacatagtccatgaagtggtgggacttttc 545
Query: 370 cttctgcagatgaggaaccaggaaggaagcagctagtgcctcgtttaaggtggtgtagtt 429
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 544 cttctgcagatgaggaaccaggaaggaagcagctagtgcctcatttaaggtggtgtagtt 485
Query: 430 attcaccggcctgcagtacagtgttcagtgcataaaacgcacacccagcttcc------- 482
| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 actcaccggcctgcagtacagtgttcagtgcataaaacgcacacccagcttccaagcaga 425
Query: 483 -aactgggaaataaggctgttccatgtccagccaacccagagggtgggacattgttcagg 541
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gaactgggaaataaggctgatccatgtccagccaacccagagggtgggacattgttcagg 365
Query: 542 agggagaaaggaggggctatgtggt 566
||||||||||||||||||| |||||
Sbjct: 364 agggagaaaggaggggctacgtggt 340
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_c10.g1 MSMg01no139_c10.g1 CHROMAT_FILE:
MSMg01no139_c10.g1 PHD_FILE: MSMg01no139_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:27 2005
(531 letters)
>mm_chr1_138264298_138265228
Length = 931
Score = 899 bits (465), Expect = 0.0
Identities = 506/533 (94%), Gaps = 24/533 (4%)
Strand = Plus / Plus
Query: 1 actagccaaattccaaaatcagagattaatttggaaaacaattacaatttaacaataatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actagccaaattccaaaatcagagattaatttggaaaacaattacaatttaacaataatg 260
Query: 61 acttttctaattagcaaactatatctctatatttctctagtcttttatttttcccattac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttttctaattagcaaactatatctctatatttctctagtcttttatttttcccattac 320
Query: 121 tttttttttgaaaaaaa-tatacacacgatttattttattttgtgggttcaagtgttttg 179
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcttttt-gaaaaaaaatatacacacgatttattttattttgtgggttcaagtgttttg 379
Query: 180 cctgtatttatgtatgactgtgcaccacgtgcatacatgtgagtgctgggaatcaaactt 239
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 380 cctgtattgatgtatgactgtgcaccacatgcatacatgtgagtgctgggaatcaaactt 439
Query: 240 aagtctttcataaccagtgcttttgtttgtttgtttgtttgtttgtttgtttgtttgttt 299
||||||||||||||||||||||| ||||||||||||||||
Sbjct: 440 aagtctttcataaccagtgcttt---------------------gtttgtttgtttgttt 478
Query: 300 gtttgtttttgacaaggtttcttgttacccaggttggtcttcctccctcctccttctaag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gtttgtttttgacaaggtttcttgttacccaggttggtcttcctccctcctccttctaag 538
Query: 360 ggctggaattatatatacatgtatgtcaccatccatatggagtttttttt-ctaattttt 418
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 539 ggctggaattatatatacatgtatgtcaccatccatatggagtttttttttctaattttt 598
Query: 419 aattacacatatttagtgtgtgtgtttccatattttcccctaaaagttctttgacctctc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 aattacacatatttagtgtgtgtgtttccatattttcccctaaaagttctttgacctctc 658
Query: 479 ctgtaagatctgctcctaaaaattttaatgattttgatactcctgatttatac 531
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 ctgtaagatctgctcctaaaaattttaatgattttgatactcctgatttatac 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
