Query= MSMg01no139_d15.b1 MSMg01no139_d15.b1 CHROMAT_FILE:
MSMg01no139_d15.b1 PHD_FILE: MSMg01no139_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:33 2005
(245 letters)
>mm_chr1_186140641_186141285
Length = 645
Score = 437 bits (226), Expect = e-127
Identities = 238/242 (98%)
Strand = Plus / Plus
Query: 1 agttcaaaatataaggaaactcaatggacagaatgcagatcgatggctatttaaaagggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttcaaaatataaggaaactcaatggacagaatgcagatcgatggctatttaaaagggc 260
Query: 61 tgagagtggatgaaggtagtttttgatgtgatggacctgcctactttatgccttgattac 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagagtggatgaagggagtttttgatgtgatggacctgcctactttatgccttgattac 320
Query: 121 tgaataagtaaaaatcaccataaagctattaatattctgaccaggaagatggaaaatgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaataagtaaaaatcaccataaagctattaatattctgaccaggaagatggaaaatgag 380
Query: 181 gtcttactgtacaaggacagcagtgtagatgctcagacccacataacacctatacagatg 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcttactatacaaggacagcagtgtagatgctcagacccacataacacctatacagatg 440
Query: 241 tg 242
||
Sbjct: 441 tg 442
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no139_d15.g1 MSMg01no139_d15.g1 CHROMAT_FILE:
MSMg01no139_d15.g1 PHD_FILE: MSMg01no139_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:33 2005
(649 letters)
>mm_chr1_186275944_186276990
Length = 1047
Score = 1156 bits (598), Expect = 0.0
Identities = 636/652 (97%), Gaps = 8/652 (1%)
Strand = Plus / Minus
Query: 1 atattaaatgtgtgtgagggctatggtatactgacgtggtccattcctgcggatgaaagg 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 847 atattaaatgtgtgtgagggctatggtatactgacgtggtccgttcctgcggatgaaagg 788
Query: 61 ctccgcatttaatcccacgcagggcaagaggaaggcaagaatcagttgttacataggttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 787 ctccgcatttaatcccacgcagggcaagaggaaggcaagaatcagttgttacataggctg 728
Query: 121 gacaaaaaaaaaaaa--tcaagatttgaaaattccgagggtataggattagtctatttgt 178
||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 727 gac-----aaaaaaatctcaagatttgaaaattccgaggatataggattagtctatttgt 673
Query: 179 attgttctgggttgggcctgggccgcaaaagactcacagagcctt-atttaaaacctctg 237
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 672 attgttctgggttgggcctgggccgcaaaagactcacagagccttgttttaaaacctctg 613
Query: 238 ggctggacaaattctgaacttcagaatttggggatctgggagtggtcacatggtatgggc 297
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ggccggacaaattctgaacttcagaatttggggatctgggagtggtcacatggtatgggc 553
Query: 298 atggcgtgttacaatccacagtgtagtcagatgtagcagactgtgcccaagtgtgggcac 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 atggcgtgttacaatccacagtgtagtcagatgtagcagactgtgcccaagtgtgggcac 493
Query: 358 atttttaaagatgtggaatcaaggtgttttctccctagactgtaggaggaaaatccgtgt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 atttttaaagatgtggaatcaaggtgttttctccctagactgtaggaggaaaatccgtgt 433
Query: 418 gtgttgtgtcagttcaagtcaagatttaccaccagatgagcggagctcatgtaaagtgtt 477
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 432 gtgttgtgtcagttcaagtcaagatttaccaccatatgagcggagctcatgtaaagtgtt 373
Query: 478 ctcggctgagtgaggaagacagaaggaatgaactgtggaaaacacgccaggagctgtgga 537
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 372 ctcggctgagtgaggaagaaagaaggaatgaactgtggaaaacacaccaggagctgtgga 313
Query: 538 ctctgtacagactggtcggtccaagctaatacaggagccatggtgggcagcctgtattag 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ctctgtacagactggtcggtccaagctaatacaggagccatggtgggcagcctgtattag 253
Query: 598 gtcacatgacctgaggtttcacaggcccttggttcagttcctcccacatctg 649
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gtcacatgacctgaggtttcacaggcccttggttcagttcctcccacatctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1047
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1037
Effective search space: 662643
Effective search space used: 662643
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
