BAC Information

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BAC

Clone NameMSMg01-139L16
Chromosome1 (Build37)
Map Location 87,483,116 - 87,483,671
singlet/doubletsinglet
Overlap geneSp110
Upstream geneLOC100040213, LOC100039794, EG665338
Downstream geneSp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139L16.T7 (MSMg01no139_l16.b1)MSMg01-139L16.TJ (MSMg01no139_l16.g1)
ACCAG345054AG345055
length714713
length of high quality
(start - end)		560 (42 - 601)579 (72 - 650)
definitionCHROMAT_FILE: MSMg01no139_l16.b1 PHD_FILE: MSMg01no139_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:13 2005CHROMAT_FILE: MSMg01no139_l16.g1 PHD_FILE: MSMg01no139_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:13 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGAATCACCTCTTGGGAAATTAAGCTAGGGAACAGACAATGGTAGAG
CCTAAGGATGACTTCTGGGCATGAGAACCCAAGAATTTGTGAAGGGAAAA
CAAGAACCAGACGTGAGGAGATAAAGACTTGAGCAGCTGGAGTATTGGAT
CGTTTGCCTGCTATCCCAGCACTTGAAAGCATCCAGGACCATGGAAAGAA
CTGAGGTGGGAGAAAACGGACTTGGAAGGCTTCCAGGAAGCAATGGGGAA
ACCAATGGATGACAGTATCAGAAAGGTCACAGTGTTTTTATCATTATTAT
CATTATCATAATTATGATATTTATCAGTATGTGGAGGTTGGGCATATGTT
CCATGGTACACATGGAGAGGCCAAGAAACAACTTGTGAGTTGGGTCTGTT
CTTCCACCATATGGGTTGCAGGGATCAAATTCAGGTCACCAGGCTTGGTG
GCAAGGACCTCGAGGTAGTGAGCCATTTGACAGACCAATGACACATTTTA
ATTGACTGGTGACATCTCAGAGTAGAAGATGGGAGAGCGCCAAAGGCGAG
GTGGGAAGAGGTTAGAGAAGCACAGCCCTGAAGAGGAAGCTTCCCCAGGC
ACGACTAGTGAGGAGAAACCGAAAAAGTGCATCCCGCTTGGCACCCCCGG
AAGTGATTTGGCTG

GATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACATTGCTTAGCTCATCTGCTGTAGTGAC
TTTTCATCCTTCCCTTCTGTGATACAGGGAGTCACAGCTCTTACTTAACT
CTAGTCCTGAGCTGAGAGCTAGAGACAAGCATGACGTAAGATATACTCAC
CTGAGAGGTGGTCCTGCTACTGCCTACTGTGCTAGAATTCCCTACTTCAC
CCTATTGGTCATTGTTTAATGTAGATAGCAACTTTGACAAAATACTTGGG
GTCAGTCAGGGCTACTGTTACAATCTTCTCTTCCAGTCATTGGGCATTCT
GTGTATACTTTGTAATTAAGCATCACACAGAGGAGAAAATAAGGCTTTGC
TTGGGAAAAGAGACTCTGGGTATCTCAATGCAGACGTGATGGTTGTAATG
AGAATCCAAGACTTTCTGACACAAACCAGTCATCACCAGCAAGTTTAAAC
AGTCCTATCATAACTTGAGAAGCTGGCATGTGATGCTGACTGTGACACAG
AAATTTCCAGAGTCCACACTTCTGAGCAGATGAAGCTGGGAGTCTTGTAA
AAATGGAAATGGATCTTGGATTCTGTTTCTCTGGGAATTCTGTTCTTACA
AACAGAAACACAAAATAAGAGGCAACTGCCTCTTGTTGCTATGAAATACT
GCACCCAAGAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_l16.b1 MSMg01no139_l16.b1 CHROMAT_FILE:
MSMg01no139_l16.b1 PHD_FILE: MSMg01no139_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:13 2005
         (560 letters)



>mm_chr1_87482912_87483871
          Length = 960

 Score =  990 bits (512), Expect = 0.0
 Identities = 545/556 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgaatcacctcttgggaaattaagctagggaacagacaatggtagagcctaa 64
           |||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 205 gaattctttgaatcagttcttgggaaattaagctagggaacagataatggtagagcctaa 264

                                                                       
Query: 65  ggatgacttctgggcatgagaacccaagaatttgtgaagggaaaacaagaaccagacgtg 124
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 265 ggatgacttctgggcatgagaaaccaagaatttgtgaagggaaaacaagaaccagacatg 324

                                                                       
Query: 125 aggagataaagacttgagcagctggagtattggatcgtttgcctgctatcccagcacttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggagataaagacttgagcagctggagtattggatcgtttgcctgctatcccagcacttg 384

                                                                       
Query: 185 aaagcatccaggaccatggaaagaactgaggtgggagaaaacggacttggaaggcttcca 244
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 385 aaagcatccaggaccatggaaagaaccgaggtgggagaaaacggacttggaaggcttcca 444

                                                                       
Query: 245 ggaagcaatggggaaaccaatggatgacagtatcagaaaggtcacagtgtttttatcatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggaagcaatggggaaaccaatggatgacagtatcagaaaggtcacagtgtttttatcatt 504

                                                                       
Query: 305 attatcattatcataattatgatatttatcagtatgtggaggttgggcatatgttccatg 364
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 505 attatcattatcataattatgacatttatcagtatgtggaggttgggcatatgttccatg 564

                                                                       
Query: 365 gtacacatggagaggccaagaaacaacttgtgagttgggtctgttcttccaccatatggg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtacacatggagaggccaagaaacaacttgtgagttgggtctgttcttccaccatatggg 624

                                                                       
Query: 425 ttgcagggatcaaattcaggtcaccaggcttggtggcaaggacctcgaggtagtgagcca 484
           || |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 625 tttcagggatcaaatgcaggtcaccaggcttggtggcaaggacctcgagctagtgagcca 684

                                                                       
Query: 485 tttgacagaccaatgacacattttaattgactggtgacatctcagagtagaagatgggag 544
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttgccagaccaatgacacattttaattgactggtgacatctcagagtagaagatgggag 744

                           
Query: 545 agcgccaaaggcgagg 560
           ||||||||||||||||
Sbjct: 745 agcgccaaaggcgagg 760


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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