BAC Information

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BAC

Clone NameMSMg01-139O04
Chromosome1 (Build37)
Map Location 73,912,594 - 73,913,098
singlet/doubletsinglet
Overlap genenone
Upstream geneIgfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik, Pinc, LOC672208, LOC100043291
Downstream geneTns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139O04.T7 (MSMg01no139_o04.b1)MSMg01-139O04.TJ (MSMg01no139_o04.g1)
ACCAG345173AG345174
length712703
length of high quality
(start - end)
664 (49 - 712)620 (80 - 699)
definitionCHROMAT_FILE: MSMg01no139_o04.b1 PHD_FILE: MSMg01no139_o04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:25 2005CHROMAT_FILE: MSMg01no139_o04.g1 PHD_FILE: MSMg01no139_o04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCAACTGATGCATACTGAATGGCTGAGAAGCACCTAAAGAAA
TGTTCAACATCCTTAGTCATCAGGGAAATGCAAGTCAAAAAACCCCCTGA
GATTCTACCTCACACCAGTCAGAATGGCTAAGATAAAAAACTCAGGGGAC
AGCAGATGCTGGCGAGGATGTGGGGAAAGAGAAACACTACTCCATTGCTG
GTGGGATTGCAAGCTGCTACAACCTGAAAATCAGTTTGGTGGTTCCTCAG
AAAATTGGACATAGTACTACCGGAAGATCCAGCTATACCACGCTTGAGCA
TATACCCAGAAGATGCTCCAACATATAATAAGGACACATGCTCCACTATG
TTCACAGGCTCTCCTGTTTCTCTCCCATCACATCTCGTACATACTGACAC
AGGGCTGTGGTGTTGGCTTGGTGCTTCCCTGTGTGCCCCGAAAGTTCTCT
TCTTAGTTGTCAGTTGGTCATCTTCTGTCGTCATGTTGTTAAAGTTGGGT
GTGTGAGTGTCACAATCTATGTCCCAAGTCAGTGCTACCTGTCATCGATA
AGTCAATTAAAAGTGCTTAATTAAAAGCAAAGCAAAGAAAGGGAGTTATT
TAATGTGGCCACACTAGGAAGAGATCCAAGCGAACCTCTCACATCCTTCC
GGTCCTGAAGTG
NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATG
GCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACACTGAGATTCCACTTCACTCCAGTCAGAATGGCTA
AGATCAAAAACTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTG
GAAATCAGTCTGGCGGCTCCTCAGAAAATTGGACATAGTACTACCGGAGG
ATCCCGCAATACCTCTTCTGGGCATATATCCAGAAGATGTCCCAACCGGT
AAGAAGAACACATGCTCCACTATGTTCATAGCAGCCTTGTTTATAATAGC
CAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGA
AAATGTGGTACATTTACACAATGGAATACTACTCAGCTATTAAAAAGAAT
GAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGTATCATCCT
GAGTGAAGTAACCCAATCACAAAGGAACTCGCACAATATGTACTCACTGA
TAAGTGGATATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATACAA
CCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_o04.b1 MSMg01no139_o04.b1 CHROMAT_FILE:
MSMg01no139_o04.b1 PHD_FILE: MSMg01no139_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:25 2005
         (664 letters)



>mm_chr1_73912035_73913098
          Length = 1064

 Score =  890 bits (460), Expect = 0.0
 Identities = 496/512 (96%), Gaps = 7/512 (1%)
 Strand = Plus / Minus

                                                                        
Query: 153  agcagatgctggcgaggatgtggggaaagagaaacactactccattgctggtgggattgc 212
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1064 agcagatgctggcgaggatgtggggaaagagaaacactactccattgctggtgggattgc 1005

                                                                        
Query: 213  aagctgctacaacctgaaaatcagtttggtggttcctcagaaaattggacatagtactac 272
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 1004 aagctgctacaacctgaaaatcagtttggtggttcctcagaaaattggacatagtact-- 947

                                                                        
Query: 273  cggaagatccagctataccacgcttgagcatatacccagaagatgctccaacatataata 332
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946  -----gatccagctataccacgcttgagcatatacccagaagatgctccaacatataata 892

                                                                        
Query: 333  aggacacatgctccactatgttcacaggctctcctgtttctctcccatcacatctcgtac 392
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 891  aggacacatgctccactatgttcacaggctctcctgtttctctcccatcccatctcgtac 832

                                                                        
Query: 393  atactgacacagggctgtggtgttggcttggtgcttccctgtgtgccccgaaagttctct 452
            |||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||
Sbjct: 831  atactgacacagggctgtggtgttggcttggtgcttccctatgtgccctgaatgttctct 772

                                                                        
Query: 453  tcttagttgtcagttggtcatcttctgtcgtcatgttgttaaagttgggtgtgtgagtgt 512
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 771  tcttagttgtcagttggtcatcttctgtcgtcatgttgttaaagttgggtgtgtgtgtgt 712

                                                                        
Query: 513  cacaatctatgtcccaagtcagtgctacctgtcatcgataagtcaattaaaagtgcttaa 572
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 711  cacaatctatgtcccaagtcagtgctacctgtcatcaataagtcaattaaaagtgcttaa 652

                                                                        
Query: 573  ttaaaagcaaagcaaagaaagggagttatttaatgtggccacactaggaagagatccaag 632
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 651  ttaaaagcaaagcaaagaaagggagttatttaatgtggccacactgggaagagatccaag 592

                                            
Query: 633  cgaacctctcacatccttccggtcctgaagtg 664
            | ||||||||||||||||| ||||||||||||
Sbjct: 591  caaacctctcacatccttctggtcctgaagtg 560


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)