BAC Information

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BAC

Clone NameMSMg01-139P24
Chromosome1 (Build37)
Map Location 93,293,906 - 93,461,078
singlet/doubletdoublet
Overlap geneIlkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1
Upstream geneCops8, Col6a3, Mlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923
Downstream geneTwist2, Hdac4, LOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139P24.T7 (MSMg01no139_p24.b1)MSMg01-139P24.TJ (MSMg01no139_p24.g1)
ACCAG345260AG345261
length728750
length of high quality
(start - end)
554 (41 - 594)165 (69 - 233)
definitionCHROMAT_FILE: MSMg01no139_p24.b1 PHD_FILE: MSMg01no139_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:35 2005CHROMAT_FILE: MSMg01no139_p24.g1 PHD_FILE: MSMg01no139_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,460,528 - 93,461,078)(93,293,906 - 93,294,070)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAATTCA
CTATTGTCATTCCCTATTATTCACTCATTCATTCGTTCGTTCATTCATTC
ATTTGACCAGCCAGCCAGCATTTATGAAGCATCTGCAGTAAGCTGGCTCT
GTAGGGGTGGGCAAGGAAGCTCAGGAAGTGAATGAGTTACCTCTTCCTTA
TTACAGGTGCTGGCTTCTATAGGGGACACCAACTGCTAGGCTACTTTAGC
CTACAAAAGTCCCAAAGAATGGCTTCCTCTTCTGCTCAAGACCATTACTG
AGTCCAGACACCAGAGGGCAGGGTATATCCTGGCCACCTAGGGCCAAACA
AAACCTCAAACTAGGGCTGGTCACTGTCTCAACCATCACCACCACCACCA
ATGTGCTACTCCAGCGCTCAGTCTAAAGGGAAGGCAGGGTTCAGCCTCTG
CCTCTGAAGCTTGTGCCTGCCGGCTGCGCTGCGAGGAGTCAGATAAGGCA
GAAACTGCCAACAGGAGGAGATGGTCCTTATTCTCAAGGCAGAGCGATGG
GATTCAGGATCTCTTATCCAAAGTGCTTGGAGCCAGAAATGCTGCACACT
TTGAAGTTTTCTTTCTGCTTTGGAAATACTTACATAGAAACAATAAGGTA
TCTTGGACATGGAATCACAGTCTAAATGTAAAACTCCTTTATTTCCCACC
ATTACTTTATATATGTACATAATCTAAC
GCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTAAGTGCCTGTGAGAAAACAAGACAAGAGTCT
TGTGACCTCAGTTTCTTCAAAACACATAATTATTCTTGGAATGTGTTTTT
GTGTCTCCCCCACCCCCTGTAGTGGATAGGAGTGAGTTTATTTCAGATTA
CTCAATATGTTTGGGGGGGAGAGGGGGAGAGAGGCTCTCTTTTCTCCTTT
TTTCTTTTTCTGTCTTTTGTTTTTTTTCTCCTTTTTTTTTTCTCTCTCTT
TTTTTCCTTTCTTTTTATTTTTTTTTTTTTCTTTTCTCTCCTTTTCCCCT
CCCTATTTTTTTATTTTCTCTCCATGGCTTCCCCTTTTTTTTTTCTATTT
TTTTAGTCTCTCTCCCCCCCCTCTTTCTTTTTTTCCATTTTTTTTTTTCT
CCTTCTTTTTTCTCCCCTCTCCTCCCCCCCCCCCTTTTTTTTTTCCTTTT
TTTTTCCCTCCCTTTTTTTTTTTCCTCCCCCCTTTCTCATCGGCTTTTTC
CCCGCCCCCTATATATTATTATCTCCCCTTTTTTTTTTTTTTTTTTACCC
CCCTTCCCTTTTTCTTTTTTTTCTCTTTCTTATTTACCCCCCCCCCTTTT
TTTTTTCTCCCCCCCCCCCCCCCCTTCTCTTTTTTTTTCCCCCTCCTCCC
CCTTGTTTTTTTTTTTCCTCCCTCCTTTCCCTTTTTTTTTTTCCCCCCCA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_p24.b1 MSMg01no139_p24.b1 CHROMAT_FILE:
MSMg01no139_p24.b1 PHD_FILE: MSMg01no139_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:35 2005
         (554 letters)



>mm_chr1_93460265_93461218
          Length = 954

 Score = 1011 bits (523), Expect = 0.0
 Identities = 544/551 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcactattgtcattccctattattcactcattcattcgttcgttcattcattcatt 63
           ||||||||||||||||   | |||||||||||||||||||||||||||||||||||||||
Sbjct: 814 gaattcactattgtcaaagcatattattcactcattcattcgttcgttcattcattcatt 755

                                                                       
Query: 64  tgaccagccagccagcatttatgaagcatctgcagtaagctggctctgtaggggtgggca 123
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 754 tgaccagccagccagcatttatgaagcatctgcagtaaactggctctgtaggggtgggca 695

                                                                       
Query: 124 aggaagctcaggaagtgaatgagttacctcttccttattacaggtgctggcttctatagg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 aggaagctcaggaagtgaatgagttacctcttccttattacaggtgctggcttctatagg 635

                                                                       
Query: 184 ggacaccaactgctaggctactttagcctacaaaagtcccaaagaatggcttcctcttct 243
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 ggacaccagctgctaggctactttagcctacaaaagtcccaaagaatggcttcctcttct 575

                                                                       
Query: 244 gctcaagaccattactgagtccagacaccagagggcagggtatatcctggccacctaggg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gctcaagaccattactgagtccagacaccagagggcagggtatatcctggccacctaggg 515

                                                                       
Query: 304 ccaaacaaaacctcaaactagggctggtcactgtctcaaccatcaccaccaccaccaatg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ccaaacaaaacctcaaactagggctggtcactgtctcaaccatcaccaccaccaccaatg 455

                                                                       
Query: 364 tgctactccagcgctcagtctaaagggaaggcagggttcagcctctgcctctgaagcttg 423
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tgctactccagtgctcagtctaaagggaaggcagggttcagcctctgcctctgaagcttg 395

                                                                       
Query: 424 tgcctgccggctgcgctgcgaggagtcagataaggcagaaactgccaacaggaggagatg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tgcctgccggctgcgctgcgaggagtcagataaggcagaaactgccaacaggaggagatg 335

                                                                       
Query: 484 gtccttattctcaaggcagagcgatgggattcaggatctcttatccaaagtgcttggagc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gtccttattctcaaggcagagcgatgggattcaggatctcttatccaaagtgcttggagc 275

                      
Query: 544 cagaaatgctg 554
           |||||||||||
Sbjct: 274 cagaaatgctg 264


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no139_p24.g1 MSMg01no139_p24.g1 CHROMAT_FILE:
MSMg01no139_p24.g1 PHD_FILE: MSMg01no139_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:35 2005
         (165 letters)



>mm_chr1_93293706_93294270
          Length = 565

 Score =  319 bits (165), Expect = 5e-92
 Identities = 165/165 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagtgcctgtgagaaaacaagacaagagtcttgtgacctcagtttcttcaaaacacata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagtgcctgtgagaaaacaagacaagagtcttgtgacctcagtttcttcaaaacacata 260

                                                                       
Query: 61  attattcttggaatgtgtttttgtgtctcccccaccccctgtagtggataggagtgagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attattcttggaatgtgtttttgtgtctcccccaccccctgtagtggataggagtgagtt 320

                                                        
Query: 121 tatttcagattactcaatatgtttgggggggagagggggagagag 165
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatttcagattactcaatatgtttgggggggagagggggagagag 365


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 565
Length adjustment: 8
Effective length of query: 157
Effective length of database: 557
Effective search space:    87449
Effective search space used:    87449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)