CCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGTTCCAGACTCATCACCAGTCATGATTTAAGCTTTATTAC
AGATATATAGTAATAAAACAGCATAGTATTAACATAAATACAAAAAACAG
AAAGGATTACCAATGGAATCAAATTGAAGATCCAGTTGTTAATTTATATA
ATTATAAACACCTGTTTTTTTTATAAGCAATCTAAAATTAAATAGTGGGA
AATGGAAAGCATCTTCAAGAAATGGTACTTGTATGATCAGGTGCTGCACA
ATCTCCTCCCACACCCAGAGACAACATAACTTCAGGAGGTCCATCGTAAC
CAGGCTCACAGTGAGTCTCACCAGCCCAAACACCTGGCCTAACTGGGACC
CCTACAGAGCCCAGTGGACATTGGACCTATTCATCCTGCCAGAGACACAT
CTTTGTTCCAGTCCAAAACTCTGCCCAGGGTAGACTCAGCATTCCATTCA
CCTTCACCTGCACCCCTCAGAAACAGCCTGATTCTCAGGAAGTTTGCCAT
AACCAAGGTCACAGGAGATCTCCCATAGCCAGAGTAAAAGGAAGTCTTCC
CTAAATAGTGACACGGGAGACTCACCTTAACCAGAGAAAGCACACTTTGT
CTCATAGAATACCTGTTCTAATTCACCTCACAGATCTACACTTTCATCAA
GGA

TTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAACCTCCTTCATCCCAAG
TCTCCATCTACTCCCAGAGATGGGTTACCACACTCAAGATGATATTTTCT
AGTTCCATTGTATTGTCTGAAAATTTCATACCTTTTTAAAAAATAGCTGA
GTAGTATTTCTATTGTGTAGCTATACCACATTTTCTTTATTCTTCAGTTG
CGGGGCATCTAGATTGTTTTCAGTTTCTAGCTATTGTTAATAAACTTGCT
ATGAACATATTTGAGCAAGTGTCCTTTTACTGTAATAGGGCATCTCTTGG
TATATGCTCTGGAGTGGTATAGCTGAGTCTTGGAATAGTTCTATTCACCA
TTTTCCGAGAAATTGAGAAATTGATTTCCAAGTGATTGCACAAGTTTGTA
CTCCCAGTACCAATGCTGTAGTGTTCTCTTCACTGCACATCCTCAACTCG
AGCCATGTTACATGTGTCTTTTGACCTATCCATTGTCGCTGGTATTATAA
GTTGCCCCCTAGCCTAACTTTTTATGCCTTATCCCTGTATTATATGTCTT
CTCGTTCACACCTTTTTTTTTCTCTTTCTCTCTCTATTTTCTTCCCTTCT
CTTTTCTCTCTCATATGCTTTTTTTCCCTCCCCTATCCTCTTTTTTCTCC
TCTTCTCCTCCCCTTT

Query= MSMg01no140_d04.b1 MSMg01no140_d04.b1 CHROMAT_FILE:
MSMg01no140_d04.b1 PHD_FILE: MSMg01no140_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:51 2005
         (494 letters)



>mm_chr1_141865535_141866428
          Length = 894

 Score =  934 bits (483), Expect = 0.0
 Identities = 492/495 (99%), Gaps = 1/495 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaccagtcatgatttaagctttattacagatatatagtaataaaacagcatagtattaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tcaccagtcatgatttaagctttattacagatatatagtaataaaacagcatagtattaa 259

                                                                       
Query: 61  cataaatacaaaaaacagaaaggattaccaatggaatcaaattgaagatccagttgttaa 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cataaatacagaaaacagaaaggattaccaatggaatcaaattgaagatccagttgttaa 319

                                                                       
Query: 121 tttatataattataaacacctgtttttttt-ataagcaatctaaaattaaatagtgggaa 179
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 320 tttatataattataaacacctgtttttttttataagcaatctaaaattaaatagtgggaa 379

                                                                       
Query: 180 atggaaagcatcttcaagaaatggtacttgtatgatcaggtgctgcacaatctcctccca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atggaaagcatcttcaagaaatggtacttgtatgatcaggtgctgcacaatctcctccca 439

                                                                       
Query: 240 cacccagagacaacataacttcaggaggtccatcgtaaccaggctcacagtgagtctcac 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cacccagagacaacataacttcaggaggtccatcgtaaccaggctcacagtgagtctcac 499

                                                                       
Query: 300 cagcccaaacacctggcctaactgggacccctacagagcccagtggacattggacctatt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cagcccaaacacctggcctaactgggacccctacagagcccagtggacattggacctatt 559

                                                                       
Query: 360 catcctgccagagacacatctttgttccagtccaaaactctgcccagggtagactcagca 419
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 560 catcctgccagagacacatctttgttccagtccaaaaccctgcccagggtagactcagca 619

                                                                       
Query: 420 ttccattcaccttcacctgcacccctcagaaacagcctgattctcaggaagtttgccata 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttccattcaccttcacctgcacccctcagaaacagcctgattctcaggaagtttgccata 679

                          
Query: 480 accaaggtcacagga 494
           |||||||||||||||
Sbjct: 680 accaaggtcacagga 694


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)