NAAACATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCCGGATTCAATGATTTTCTAGGATGTTGGAACA
CTTGTGGAGGCTCACCTGTGTGAAAATTCGATCTTTAAAGGCACTCATAA
TGAAACAATACTGAAAGAGAGCATACACCATACTAACGCGGGATAGAGTT
TGAGTATATGGGCTATGAGAATGCCAAGGTTCCAGGTTGCTGAGTTTCCT
TGAAACTCTTTGCCCCATGACTGCCTCTAGGCCTTTTGACCCCAACAGGC
AGACTTCACTGGAGTGGGCGTAGCAGTTCCTTTTACTTCTTTGTGGACTA
GAAGTTGTTGATTTCAGACCCAAAGGCCTGCTGACTTACAAATGTGTTTT
AGTAAGATACCAGTTGATTAACAGTTACATTTTTTTGTTTGGGAAAATTT
GTTTTATGTATCTATGAAAATTAAGGTTATTATTGAACTCTCATCTGTTA
AATTAGAATTTTGGGGCTAAGGCAAAGAAATCAAATAGTTTCTACAGATT
CTGCAGAGTGTGACCTTAAGCTCCCAAATTCAAATTTTGGAACTTTTCCT
TTTGAAGGGTACTTGCATTANTGTGTGTGTGTGTGTGTGTGTGTGTGTGC
ACNTGTTGCCGNGNCTTCCGTCTTCCTCTCTTTTCCTTTCTTCCCCCGCT
TACC

NNNNCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTACTATATTGAATAGGTAGGG
AGAAAGTGGGCAGCCTTGTCTAGTCCCTGATTTTAGTGGAATTGCTTCCA
GCTTCTCTCCATTTACTTTGATGTTGGCTACTGGTTTGCTGTATATTGCT
TTTATTATGTATAGGTATGGGCCTTGAATTCCTGATCTTTCCATAAGTTT
TATCATGAAGTGGTGTTGGATTTTATCAAATGCTTTCTCAGCATCTAACT
AGATTATCATGTGATTTTTGCCTTTGAGTTTGTTTATATAATGGATTAAA
TTGATGGATTTTCATATATTAAACCATTCATGCATCCCTGGGATGAAGCC
TACTTGATCATGCTGGATGATCGGTTTGATGTGTTCTTGGATTCGGTTTG
TGAGGATTTGATTGAGTATTTTTGCATTAATATTCATAAGGGAAATTGGT
CTGAAGTTCTCTTTATTGGATATTTGTGTGGTTTAGGTATCAGAGTAATT
GTGGCTTTATAGAATGAATTGGGTAGAGTAGCTTCTGTTTCTATTTTGTG
GAATAGTTTGAAGAGAATTGGAATTAAGTCCTCTTTGAAGATCTCATAGA
ACTCTGCACTAAACCCATCTGGTCCTGGGCTTCTTTTGCTTACGAGACTA
TTAATG

Query= MSMg01no140_e01.b1 MSMg01no140_e01.b1 CHROMAT_FILE:
MSMg01no140_e01.b1 PHD_FILE: MSMg01no140_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:55 2005
         (586 letters)



>mm_chr1_17922358_17923343
          Length = 986

 Score =  905 bits (468), Expect = 0.0
 Identities = 551/589 (93%), Gaps = 18/589 (3%)
 Strand = Plus / Plus

                                                                       
Query: 4   ttcaatgattttctaggatgttggaacacttgtggaggctcacctgtgtgaaaattcgat 63
           ||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||| ||
Sbjct: 190 ttcaaggattttctaggatgttggaacactggtggaggcacacctgtgtgaaaattcaat 249

                                                                       
Query: 64  ctttaaaggcactcataatgaaacaatactgaaagagagcatacaccatactaacgcggg 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 250 ctttaaaggcactcataatgaaacaatactgaaagagagcatacaccatactaatgcagg 309

                                                                       
Query: 124 atagagtttgagtatatgggctatgagaatgccaaggttccaggttgctgagtttccttg 183
           |||| |||||||||||||||||| ||||||||||||||| ||||  ||||  ||||||||
Sbjct: 310 atagggtttgagtatatgggctacgagaatgccaaggttgcaggaggctg--tttccttg 367

                                                                       
Query: 184 aaactctttgccccatgactgcctctaggccttttgaccccaacaggcagacttcactgg 243
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaactctttgcctcatgactgcctctaggccttttgaccccaacaggcagacttcactgg 427

                                                                       
Query: 244 agtgggcgtagcagttccttttacttctttgtggactagaagttg----ttg-------- 291
           ||||||| ||||||||||||||||||||| |||||||||||||||    |||        
Sbjct: 428 agtgggcatagcagttccttttacttcttagtggactagaagttggagtttgttagaaca 487

                                                                       
Query: 292 ----atttcagacccaaaggcctgctgacttacaaatgtgttttagtaagataccagttg 347
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aatgatttcagacccaaaggcctgctgacttacaaatgtgttttagtaagataccagttg 547

                                                                       
Query: 348 attaacagttacatttttttgtttgggaaaatttgttttatgtatctatgaaaattaagg 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 attaacagttacatttttttgtttgggaaaatttgttttatgtatctatgaaaattaagg 607

                                                                       
Query: 408 ttattattgaactctcatctgttaaattagaattttggggctaaggcaaagaaatcaaat 467
           ||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ttaatattaaagtctcatctgttaaattagaattttggggctaaggcaaagaaatcaaat 667

                                                                       
Query: 468 agtttctacagattctgcagagtgtgaccttaagctcccaaattcaaattttggaacttt 527
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 668 agtttctacagattctgcagagtgtgaccttaagctcccaaattcaatttttggaacttt 727

                                                            
Query: 528 tccttttgaagggtacttgcattantgtgtgtgtgtgtgtgtgtgtgtg 576
           |||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 728 tccttttgaagggtacttgcattagtgtgtgtgtgtgtgtgtgagtgtg 776


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)