TCATXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAGAGACCGCGGAA
TTCTTTATTATTCCAATACTTGTTACCAAATTTACCTTTTCTTATATGGG
ATTTTGTTTAATGAGCCATAGCCACATTGATTTCATTTGAATGAAGGGAT
GTTATTTCATAGACCAGCATAAGTTTCTAAAAGAGGCAATTCCTTTGCAA
TGGGGTTGTCAGTCTCTGTTATTACCTTGAAACCTGAGAAGTCAGAGACT
GGTGTTGTGCTGGTATATTAGTTACTTTATGTGTTGCTAGGAAAAAAGAG
TTTATTTTAGATCAAGAATATTGTCTATCATTGTAGGGGAATCATGGCAG
CAATAGCTGGAGGCAGCTGGTCACATCGTATCTGTAGTCAGGAAGCTGAG
AGACATGATTGCTCTGTGCTCAGCGCACTTTTTCTTTTTATGCAGTCCAG
GATGTCAAACCATAAATTGGTGCCACTCACATTTAGAAAGAATCTTCACT
CCTCAGCCGAATCTAGAAACCCCTTACAGACATGCTCAGAAGTTAGTTCA
TTGTGAATCATCATTCTAAATTCCTTCAATTTGACAAGGTTAGCCATCCC
AGTAGGGAAAGATAGGCTCAGTAATTGGCCTACAACTTGCCACAGGTCTG
GATAGCACAGGGCTATACCAGCTAATTCTAGTGCAAGCTGATAAACAAGG
CTGCTCAGAACT

CAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGCAGTCGGGTTAAGAAAATCTTGCAG
CATAGGAAACAGGGTGTCCTTTGAGTCTATATTGTGGCTTTTAGATCAGT
GTTTTCATGGGATTCCTCTGGGTGTGTACAAGTTGGTCTCTGTATCTATG
TTCCTTGTGCCTTTTCTTGGCTTCTCTTCCTCCTGTTTGTTTTGTTCTAC
TCTAATGTATTAGCTTTTGTTTTATCTTATTTTTACTTAAAACTTAGAAG
CCTATTTGTCTTTCTCATTATAGGAGTGGATCTGGATGGGAAGAGAGGTA
GGAAGGAACTAGGAGGAGTAGTGGTAATGCTTTCCCTTTCTTCGCTTTCT
CCTTCCTCCTTTCTCCTCTCTTTCTTACTCCCTTTCTTTCCCTTCCTTAC
CCTCTTCCTACCCTCCTCCTTCTTTTCTCCCCCCCCTCCCATTCCCCCCC
CCCATCCTATATCCTTATACTTTCCTCATCCACTTTACCTTTTTTAATTT
TCCTTTTACTCCTCTTCCCCTTTACCCTTCTCGCTTATATCTACCTTTTA
CCTCCCTCCATTTTTCCCTTCTTCTCTTTTTCTTTCTCTTTCTTCCCTCT
TTATCCCTCCTTCCTTCCCCCTCACCTCTATCCCTTACTTATCCCCCCAC
TATTTCCCCCCTCTTTCCTCCTTTTTTCTCCACTTTAC

Query= MSMg01no140_l11.b1 MSMg01no140_l11.b1 CHROMAT_FILE:
MSMg01no140_l11.b1 PHD_FILE: MSMg01no140_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:32 2005
         (549 letters)



>mm_chr1_170730422_170731371
          Length = 950

 Score = 1017 bits (526), Expect = 0.0
 Identities = 542/548 (98%), Gaps = 3/548 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctttattat--tccaatacttgttaccaaatttaccttttcttatatgggatttt 61
           ||||||||||||||  |  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctttattataata-aatacttgttaccaaatttaccttttcttatatgggatttt 262

                                                                       
Query: 62  gtttaatgagccatagccacattgatttcatttgaatgaagggatgttatttcatagacc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gtttaatgagccatagccacattgatttcatttgaatgaagggatgttatttcatagacc 322

                                                                       
Query: 122 agcataagtttctaaaagaggcaattcctttgcaatggggttgtcagtctctgttattac 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agcataagtttctaaaagaggcaattcctttgcaatggggttgtcagtctctgttattac 382

                                                                       
Query: 182 cttgaaacctgagaagtcagagactggtgttgtgctggtatattagttactttatgtgtt 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cttgaaacctgagaagtcagagactggtgttgtgctggtatattagttactttatgtgtt 442

                                                                       
Query: 242 gctaggaaaaaagagtttattttagatcaagaatattgtctatcattgtaggggaatcat 301
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 443 gctaggaaaaaagagtttattttagatcaagaatacagtctatcattgtaggggaatcat 502

                                                                       
Query: 302 ggcagcaatagctggaggcagctggtcacatcgtatctgtagtcaggaagctgagagaca 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ggcagcaatagctggaggcagctggtcacatcgtatctgtagtcaggaagctgagagaca 562

                                                                       
Query: 362 tgattgctctgtgctcagcgcactttttctttttatgcagtccaggatgtcaaaccataa 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tgattgctctgtgctcagcgcactttttctttttatgcagtccaggatgtcaaaccataa 622

                                                                       
Query: 422 attggtgccactcacatttagaaagaatcttcactcctcagccgaatctagaaacccctt 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 attggtgccactcacatttagaaagaatcttcactcctcagccgaatctagaaacccctt 682

                                                                       
Query: 482 acagacatgctcagaagttagttcattgtgaatcatcattctaaattccttcaatttgac 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 acagacatgctcagaagttagttcattgtgaatcatcattctaaattccttcaatttgac 742

                   
Query: 542 aaggttag 549
           ||||||||
Sbjct: 743 aaggttag 750


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 950
Length adjustment: 10
Effective length of query: 539
Effective length of database: 940
Effective search space:   506660
Effective search space used:   506660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)