GGGAGTCTAAATTTGCGGCGCTATACGACTCCTATTTCAAGAGGATCCGC
GGAATTCCAAATATGACTGCTGTGTCATGGTCAGTGTGCGTTAGTTACTA
CAATGGGGGTGTTATATGAAAGACTTGAGTTAGAAGAAAGTCAATAGCAT
ATTTTCAGGTAGGACATATTAGAGTGAAATAAAGAGACCTCTTCACATGG
TTGATAAGGGTGGGAGGTAACAGGGGATGTAGGTGGATGACCAAAGGACT
GTCACGGACTGGGTGGACTCCCCAATCACTAGAGCAGCTGTGACATACCA
ACCCCATGCTTTCTCTCCTGATTTCTTTAGAGAAACTCAGGTGGGTAGGG
GATTGGTTTTTTTTCCCTCCCCTCACCTTTCCCTATTTTCTTACATCTTT
TCCTTTTTTCTTACCTTCCCCCCCTCTTCTTTTTTTCTCCCCGTTTTTAT
CTTTTCATCCTTTTTCCTCCTTTCCCTCTTATAACCCTACTCCTTTTCTT
TTCCTTCCCTTTTTCATTTTTTTTTTTTTCTTCCATTTTTTCCTCCCCTT
CTTCCTCCCCATTTCCCCATTTTATTCTTACTCCCTTCTTTTTATCTTCC
TCCCTTTTACTTCCCCTTCTTCCTTACCTTTTCTTTTTTTTTCACCCTTT
TCCCCTTCTTTACTTCTTTTCTTTTTCCGCCTCTTCCTATTTATTCCCCC
CTCCTCTGATCCTATCCTTTCCTGTCCCCGCCCCCTCCCCCGCTTATTCC
CG

NTTTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATACCTTTTTAAAATAGATAAAA
TTTAGAATATCCTTCCCCCATACGGATCCCATATAATTGGGCAATGGCCT
GTGACTAATACATTTGATTTAAAGTATCAAAAATGCATTTGAGCCCACTG
CAAGAATATGTGTGTAAAGTTACTTAAAAGACGATTGGTGATTCAGGCAG
CTGCACAGCCCAAAAGTACCCTGTGCAGAGTCATGAACAAGTGAAAGCTT
TATCCTTGTAGTTACCTGCCCATCTGGCAGCCAACAGCTCTCCCAACATC
TCCTTTCCTAATGCCCAACAGTTGTTTACTCTTTCCTTCCCTCAGGGGGT
GGAACCTCATGGCATTTGTAAATTTCATGAGCTTCCTAAATCTTATAAAC
TTTTTCTTGTCTAAAGAGAATCTTCAGTCTAGAGGGCAATGGTGTCCAAA
AGCTAAGTCTTTTAAATCTGCCCCCCTATGGAATGAATGATTGGTTCTCC
AGCTCCAAAATTGTTTCTGCTAAAGCTCTAAGCTCTAATGGGATAGTATT
AGCAGACAGTGCCTTTAGGACAGATAATTGGGCTATGCAGTTACATGTCA
ATAGCGGATTAATTATTAGAGATATTGTCTGCATGGGAATACGCCTGCTT
AGTTACTACTG

Query= MSMg01no140_m09.b1 MSMg01no140_m09.b1 CHROMAT_FILE:
MSMg01no140_m09.b1 PHD_FILE: MSMg01no140_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:36 2005
         (285 letters)



>mm_chr1_83700166_83700850
          Length = 685

 Score =  460 bits (238), Expect = e-134
 Identities = 262/270 (97%)
 Strand = Plus / Plus

                                                                       
Query: 3   tgtgtcatggtcagtgtgcgttagttactacaatgggggtgttatatgaaagacttgagt 62
           |||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||
Sbjct: 203 tgtgtcatggtcagtgtgggtcagttactacaatgcgggtgttatatgaaagacttgagt 262

                                                                       
Query: 63  tagaagaaagtcaatagcatattttcaggtaggacatattagagtgaaataaagagacct 122
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 263 tagaagaaagtcaatagcatattttcaggtagaacatattagagtgaaataaagagacct 322

                                                                       
Query: 123 cttcacatggttgataagggtgggaggtaacaggggatgtaggtggatgaccaaaggact 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cttcacatggttgataagggtgggaggtaacaggggatgtaggtggatgaccaaaggact 382

                                                                       
Query: 183 gtcacggactgggtggactccccaatcactagagcagctgtgacataccaaccccatgct 242
           ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 383 gtcacggactgggtggattccccaatcactggagcagctgtgacataccaaccccatgct 442

                                         
Query: 243 ttctctcctgatttctttagagaaactcag 272
           ||||||||||| | ||||||||||||||||
Sbjct: 443 ttctctcctgagtcctttagagaaactcag 472


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no140_m09.g1 MSMg01no140_m09.g1 CHROMAT_FILE:
MSMg01no140_m09.g1 PHD_FILE: MSMg01no140_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:36 2005
         (514 letters)



>mm_chr1_83849145_83850058
          Length = 914

 Score =  963 bits (498), Expect = 0.0
 Identities = 510/514 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatacctttttaaaatagataaaatttagaatatccttcccccatacggatcccatataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 tatacctttttaaaatagataaaatttagaatatccttcccccatacggatcccatataa 655

                                                                       
Query: 61  ttgggcaatggcctgtgactaatacatttgatttaaagtatcaaaaatgcatttgagccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ttgggcaatggcctgtgactaatacatttgatttaaagtatcaaaaatgcatttgagccc 595

                                                                       
Query: 121 actgcaagaatatgtgtgtaaagttacttaaaagacgattggtgattcaggcagctgcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 actgcaagaatatgtgtgtaaagttacttaaaagacgattggtgattcaggcagctgcac 535

                                                                       
Query: 181 agcccaaaagtaccctgtgcagagtcatgaacaagtgaaagctttatccttgtagttacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 agcccaaaagtaccctgtgcagagtcatgaacaagtgaaagctttatccttgtagttacc 475

                                                                       
Query: 241 tgcccatctggcagccaacagctctcccaacatctcctttcctaatgcccaacagttgtt 300
           |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 474 tgcccaactggcagccaacagctctcccaacatctcctttcccaatgcccaacagttgtt 415

                                                                       
Query: 301 tactctttccttccctcagggggtggaacctcatggcatttgtaaatttcatgagcttcc 360
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 414 tactctttccttccctcagggggtggaacctcatggtatttgtaaatttcatgagcttcc 355

                                                                       
Query: 361 taaatcttataaactttttcttgtctaaagagaatcttcagtctagagggcaatggtgtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 taaatcttataaactttttcttgtctaaagagaatcttcagtctagagggcaatggtgtc 295

                                                                       
Query: 421 caaaagctaagtcttttaaatctgcccccctatggaatgaatgattggttctccagctcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 caaaagctaagtcttttaaatctgcccccctatggaatgaatgattggttctccagctcc 235

                                             
Query: 481 aaaattgtttctgctaaagctctaagctctaatg 514
           |||||| |||||||||||||||||||||||||||
Sbjct: 234 aaaattttttctgctaaagctctaagctctaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)