Query= MSMg01no140_m24.b1 MSMg01no140_m24.b1 CHROMAT_FILE:
MSMg01no140_m24.b1 PHD_FILE: MSMg01no140_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:39 2005
(389 letters)
>mm_chr1_52903608_52904396
Length = 789
Score = 723 bits (374), Expect = 0.0
Identities = 380/382 (99%)
Strand = Plus / Plus
Query: 4 gaattcaattatatgtctcctagatctctaaatgatctctatcactcatttttgtctttt 63
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcaattatatgtcagctagatctctaaatgatctctatcactcatttttgtctttt 263
Query: 64 gttggatactaagctatgagtttcattgtggcagttctgtacacactgtttctgtgtttc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gttggatactaagctatgagtttcattgtggcagttctgtacacactgtttctgtgtttc 323
Query: 124 tgttgttggttctatccccactctcctcccctggctgtcagtgtgctggtcagccctcct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgttgttggttctatccccactctcctcccctggctgtcagtgtgctggtcagccctcct 383
Query: 184 cctctactccctagctcttctgcttcatggcactttggtcttttactctcattccctccc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cctctactccctagctcttctgcttcatggcactttggtcttttactctcattccctccc 443
Query: 244 taccatcctgtagccttcccttaagagatccttttctgctctcatggtcctgttttagtt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taccatcctgtagccttcccttaagagatccttttctgctctcatggtcctgttttagtt 503
Query: 304 taatgacctacacttaccatcaatctctctctctctctctctctctctctctctctctct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 taatgacctacacttaccatcaatctctctctctctctctctctctctctctctctctct 563
Query: 364 ctctctctctctctctctctct 385
||||||||||||||||||||||
Sbjct: 564 ctctctctctctctctctctct 585
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 72
Number of extensions: 33
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space: 296400
Effective search space used: 296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_m24.g1 MSMg01no140_m24.g1 CHROMAT_FILE:
MSMg01no140_m24.g1 PHD_FILE: MSMg01no140_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:39 2005
(470 letters)
>mm_chr1_53013144_53014013
Length = 870
Score = 818 bits (423), Expect = 0.0
Identities = 459/471 (97%), Gaps = 2/471 (0%)
Strand = Plus / Minus
Query: 1 acatagaaggccacgagctagagccttgctcagaaatacagatgcaagagaagaaaaaaa 60
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 813 acatagaaggccatgagctagagccttgctcagaaatacagacgcaagagaagaaaaaaa 754
Query: 61 ccgactgagtactttctgttctgttctgctttgttttgttgagacagggcttcaatatgt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 -cgactgagtactttctgttctgttctgctttgttttgttgagacagggcttcaatatgt 695
Query: 121 agccaagattggactcactcctaatcctcctccctcctcctcccaagtcctgggtttgta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 agccaagattggactcactcctaatcctcctccctcctcctcccaagtcctgggtttgta 635
Query: 181 ggactgtgccac-gcaccaggcttagaaggctttattgaatcgttcaaaccacgtggtct 239
|||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 634 ggactgtgccactgcaccaggcttagaaggctttattgaattgttcaaaccgcgtggtct 575
Query: 240 gccactagggattcataagctctgatagcagcccatcttcttttcaagtcctggtaaacc 299
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gccactagggattcaaaagctctgatagcagcccatcttcttttcaagtcctggtaaacc 515
Query: 300 aactcagcagcaggggacattgcccacatgggctgaaggactaggagctagatgggaaag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 aactcagcagcaggggacattgcccacatgggctgaaggactaggagctagatgggaaag 455
Query: 360 attgttacttagaaccaaggccagatttatcaggccagtgagcctttggaaagcaatgtg 419
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 454 attgttacttagaaccaaggccagatttagcaggccagtgagcctttggaaagcaatgtg 395
Query: 420 aaatgcattggctttggagccaggcctgggttcaaatttaagtccaagcgt 470
|| |||||||||||||||| ||||||||| ||||||| |||||||||||||
Sbjct: 394 aactgcattggctttggagtcaggcctggattcaaatataagtccaagcgt 344
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space: 395600
Effective search space used: 395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
