Query= MSMg01no141_a20.b1 MSMg01no141_a20.b1 CHROMAT_FILE:
MSMg01no141_a20.b1 PHD_FILE: MSMg01no141_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:01 2005
(615 letters)
>mm_chr1_72985051_72986065
Length = 1015
Score = 1038 bits (537), Expect = 0.0
Identities = 587/615 (95%), Gaps = 18/615 (2%)
Strand = Plus / Minus
Query: 1 tttgagaccagcccactggactgtgttcgtgccatggttattatgaggaatggcacagtt 60
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 tttgagaccaggcaactggactgtgttcgtgccatggttattatgaggaatggcacagtt 812
Query: 61 gtttcatgtttcaacatcccctttgccaaagcttaccaccaccactccctttatacacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 gtttcatgtttcaacatcccctttgccaaagcttaccaccaccactccctttat------ 758
Query: 121 acacacacacacacacacacacacacacacacacacacacacatgcacacatgcacacac 180
||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 757 ------------acacacacacacacacacacacacacacacatgcacacacgcacacac 710
Query: 181 acatacacacacacggggcaagagctaatgacccttcttcaagtagtggtctataatgac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 acatacacacacacggggcaagagctaatgacccttcttcaagtagtggtctataatgac 650
Query: 241 tattaatttttgctttaagggatgcagtttttcaacaaaacttatatatgtgtaacccta 300
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 649 tattaatttttgctttaagggatgcagtttttcaacaaaacttaaataagtgtaacccta 590
Query: 301 aaaagccggagtaaagaattttccacctctcaaatacatgaagttaacgtattttttatt 360
|||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 589 aaaaaccggagtaaagaattttccgcctctcaaatacatgaagttagcgtattttttatt 530
Query: 361 ataaaagaaaaatgaatgcaaggccctcctggtttgtacatgtctgtctataaatatttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ataaaagaaaaatgaatgcaaggccctcctggtttgtacatgtctgtctataaatatttt 470
Query: 421 aacataatcaggagcacattgtatctaccaacatctgtcctgctttggtgttgtagaaac 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 469 aacataatcaggagcacattgtatctaccaacatctgtcctgctttggcgttgtagaaac 410
Query: 481 aacacatgaaggttttgacaaggacaccctccttcatcgccctttagtcaagatactgta 540
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aacacatgaaggttttgacgaggacaccctccttcatcgccctttagtcaagatactgta 350
Query: 541 aatccagaaaccttgaccttggcctcactccttgctgggtctatatggcccatctccacc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aatccagaaaccttgaccttggcctcactccttgctgggtctatatggcccatctccacc 290
Query: 601 aagaatctgtctaag 615
|||||||||||||||
Sbjct: 289 aagaatctgtctaag 275
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no141_a20.g1 MSMg01no141_a20.g1 CHROMAT_FILE:
MSMg01no141_a20.g1 PHD_FILE: MSMg01no141_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:01 2005
(566 letters)
>mm_chr1_72829054_72830019
Length = 966
Score = 1006 bits (520), Expect = 0.0
Identities = 554/572 (96%), Gaps = 12/572 (2%)
Strand = Plus / Plus
Query: 1 tagtgagggtctgcctgcatctaatatgaatccccctggaaacgcaagaagaccaaggag 60
||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 tagtgagggtctgtatgcatctaatatgaatccatttggaaacgcaagaagaccaaggag 260
Query: 61 acaggacatgtttttggagcctgagttgggatcgggatggcacagcacagtgaccaaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaggacatgtttttggagcctgagttgggatcgggatggcacagcacagtgaccaaacc 320
Query: 121 ttagacttcggtctcctttcagtacatcatcttgccatggtatctgtttacccatctgta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagacttcggtctcctttcagtacatcatcttgccatggtatctgtttacccatctgta 380
Query: 181 aaatgaagcagcagaccaatgcctggtccggcattcaaatgggaatggggacctgtggcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatgaagcagcagaccaatgcctggtccggcattcaaatgggaatggggacctgtggcc 440
Query: 241 aggtgcccaaatctttggcacaactttagcttcagcagcttccccacaaacccagtgctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggtgcccaaatctttggcacaactttagcttcagcagcttccccacaaacccagtgctg 500
Query: 301 gacc------tttttttgtctgggtcaggaatctcataaccagaagcgttctgaaactcc 354
|||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaccacagggt------gtctgggtcaggaatctcataaccagaagcgttctgaaactcc 554
Query: 355 ttctgcgttcatcctacagtgaaagaaaatgggttcagaaggccaagccagcgggagatg 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ttctgcgttcatcctacagtgaaagaaaatgggttcagaaggccaagccagcgggagatg 614
Query: 415 tggtaaaagagcaccagatgagtctgcaaaggaaccacagtggcagagtgaaaattatgg 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tggtaaaagagcaccagatgagtctgcaaaggaaccacagtggcagagtgaaaattatgg 674
Query: 475 cagacactgaaactcatagcttgaaaaactgcctgaagaagcaatcacccttcatcacat 534
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 675 cagacactgaaactcatagcttgaaaaactgcctgaagaaacaatcacccttcatcacat 734
Query: 535 caccatcctccaaaaaggaaaataaagaagga 566
||||||||||||||||||||||||||||||||
Sbjct: 735 caccatcctccaaaaaggaaaataaagaagga 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
