BAC Information

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BAC

Clone NameMSMg01-141C02
Chromosome1 (Build37)
Map Location 23,199,272 - 23,199,971
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040338, Rims1, Rims1, EG665725, LOC665731, 4933415F23Rik, Rn4.5s-ps4
Downstream geneEG623356, Ogfrl1, LOC665782, B3gat2, Smap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141C02.T7 (MSMg01no141_c02.b1)MSMg01-141C02.TJ (MSMg01no141_c02.g1)
ACCAG346086AG346087
length1,2111,204
length of high quality
(start - end)		741 (90 - 830)762 (94 - 855)
definitionCHROMAT_FILE: MSMg01no141_c02.b1 PHD_FILE: MSMg01no141_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:11 2005CHROMAT_FILE: MSMg01no141_c02.g1 PHD_FILE: MSMg01no141_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCTTTCTTTNNNAACAATGGGCGCTAACGACTCCTAAGGGAGAGGATC
CGCGGAATTCATCACCTTCAGACCTCACCATTTAAATTGTTTAACATGGT
TCTATAGGAAGAAAGAAAACCATTGGCAGAATTGTAAGCGGGTGATCTAA
ACAGAGAAAGGGAACTGGAGAGGTAGATCACCTGTTAAGTATACTGGCTG
CTCTTCCAGAAGACCTGGATTCAGTCCTAGCACTCACATGGTGTCTCACA
ACCATCTTTAGCTCCAGTTCCAAAAGATACATTGCCCTTATCTCCCCTGC
ACCATGCAGACTCATGGTTCACAGACACATACAAGAGAAATACCCATAAG
CATAAAGTTAAAATAAATAAATATTATGAAATAACATATTCACATGCTTG
CAACCTCTAACCACTCTGGATAATTCTTTCTCCATTCTAGCAGTTTTCTC
ACATTCATACACTGAGCAATACTCATTTGAATACCACAGCAGACCTCTCT
CAAACTTCCAAATACCTAGAATCCTCTGTGAGTTGCTCTTCTGTTCAGCA
GAGTACAACCCTCTGAGAATTCTAACTGCCTTGGTCTGAGGGACTTAGGT
AGTCTTTGGAAGCATTCTGAGCTCCAACTGGCTTATGCTTTCTAGCCCAA
TGCCTGGAATTTTCCTCAGTGTAACAGGCAGGCAGTCAATAAGCATCACT
ACCCAACCACCCCCATGCCTGACTCTCAGTGGTCAACATGTTTTCTTGAT
AGAGTTCTAGTGATTGAAAAACCATCTTTTCTTATATATTTTGCTTTTCA
CTGTTAAGGTTGTTAAGTAAATCTGTTCCAAACTTGTCCCACTTTGCCAA
GCAGAACAACAATTTCTTCTTCTTCCTCTTCTTCTTCTTCTTCTTCTTCT
TCTTCCTCTTCTTCTTCTTTCTCTTCTTCTTCTTCTTCTTCTTCTTCCTT
CCTCTTCTTCTTCTTCTTCTTCCTCTTCCTCCTTCTTCTTCCTCATCCTT
CCTTCTTCCCCTTCCTTTTTCCCCTTTTTTTTTCCTTTTCCCTTTTGGGT
TTTTCCAGAAAAGGTTTTCCTCTGTGTACCCCCCCCCCCTCCCCAGGGTT
GGGATATAAAAGGGGGGGTGGTCCCCCCTGGTCCCCCCATAAAAACACCC
CTTATAGAGACCCCCCAAAAAATCTTTTGGTAAAAAAAAAATATTTTTTT
TGTTTTCTTTA

NNCCATTCTTTTTNTTAGATGGNATGCTGGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCCTTAAGAGCCCATTAGAGT
GGTCCAGTCTAAAATAGATGTCCGCAGTGGGAATCACTAACTGCGAGTTA
AAAATGGAACCAGGTATAATGTACACAGTGGAAAATGTGCATAAAATTAG
ATTGTTTTGATTAGAGCAGACTTTTCCTTCAAACCTTCTCCAGGAATTAA
TTATTTTGCTTAACTCCCCTACCCATTATTTTATCCTTGTCTCTGATTCT
AAGTGATTTTTAAAAATATCATTTGAATCTTGTCATGTTCCTACTTAAAA
TGACTTAAAATGACATGGAACCAAGTTGTCTTTGGGAAAGAGTCCTAATT
CCTAGGCTCAGAAACTATTTAATACCTCCTCTCTATGTGGGTTCATTAAT
GGCAGTTCTGGTCTGAGTGTCTGCGTCCTTCCAGGTTCGTAGGATGGTAT
TTTAACCCAGAAGTGATGCTACTAAATGCCTTCATTTTGGAAGGGTCTTT
TGGAAACTTGTGTGTTAGGGAGGAGGCATATACTGGAATAGTTCTGTTTT
AGTTAAGGTTTCCATTGTTATGAAGAGACACCATGACCAAGGCAATTCCT
ATAAAGGACAACATTTAATTGAGGATGGCTTCCAGGTTCAGAGGTTCAGT
CCATTATCATCAAGGCAGAATGATGGGTAGCAGGGTCCAGGCAGACATGG
TGCTGGAGAGGCTGAAAGATCTACATCTGCATCTGACTGTGGCTAGGGGA
AGACTGGCTCCCATGTGATTAGGAGGAGGGTCTCCTTGCCTACTTCCACA
GTGACACACCTCCTCAGATGAGGCCACACCTAATAGTGCCACTCCTTGGC
CAAGCATATCCCAGCCATAACAAGTTCCTTGTACAAAAATCCCCCACGAG
TTTGCTTTCCTCCACTGCCATGGAAGGACATAAAAAGTAGGTTCCATCCC
CCAGCCAATACTAAACTTCCCTATCCCCTGAAACCCCCATTGTATTCCCC
TTGGACATTCTGAATTTCTTATAATGGAAAAAAAAAATTTTCCCCTGGTA
AAAACCACCCCCAAATTTGGGGATATTTTCTTTAAGAAGACCTTTTTAAA
AGGAATAAATCTTCTTTTGTAAAAATTTTTTTCCCCAAACCCTTCTTTTG
TGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_c02.g1 MSMg01no141_c02.g1 CHROMAT_FILE:
MSMg01no141_c02.g1 PHD_FILE: MSMg01no141_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:11 2005
         (762 letters)



>mm_chr1_23199272_23200432
          Length = 1161

 Score = 1340 bits (693), Expect = 0.0
 Identities = 699/701 (99%), Gaps = 1/701 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagagtggtccagtctaaaatagatgtccgcagtgggaatcactaactgcgagttaaaa 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 700 ttagagtggtccagtctaaaatagatgtctgcagtgggaatcactaactgcgagttaaaa 641

                                                                       
Query: 61  atggaaccaggtataatgtacacagtggaaaatgtgcataaaattagattgttttgatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 atggaaccaggtataatgtacacagtggaaaatgtgcataaaattagattgttttgatta 581

                                                                       
Query: 121 gagcagacttttccttcaaaccttctccaggaattaattattttgcttaactcccctacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 gagcagacttttccttcaaaccttctccaggaattaattattttgcttaactcccctacc 521

                                                                       
Query: 181 cattattttatccttgtctctgattctaagtgatttttaaaaatatcatttgaatcttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 cattattttatccttgtctctgattctaagtgatttttaaaaatatcatttgaatcttgt 461

                                                                       
Query: 241 catgttcctacttaaaatgacttaaaatgacatggaaccaagttgtctttgggaaagagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 catgttcctacttaaaatgacttaaaatgacatggaaccaagttgtctttgggaaagagt 401

                                                                       
Query: 301 cctaattcctaggctcagaaactatttaatacctcctctctatgtgggttcattaatggc 360
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 400 cctaattcctaggctcagaaac-atttaatacctcctctctatgtgggttcattaatggc 342

                                                                       
Query: 361 agttctggtctgagtgtctgcgtccttccaggttcgtaggatggtattttaacccagaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 agttctggtctgagtgtctgcgtccttccaggttcgtaggatggtattttaacccagaag 282

                                                                       
Query: 421 tgatgctactaaatgccttcattttggaagggtcttttggaaacttgtgtgttagggagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tgatgctactaaatgccttcattttggaagggtcttttggaaacttgtgtgttagggagg 222

                                                                       
Query: 481 aggcatatactggaatagttctgttttagttaaggtttccattgttatgaagagacacca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 aggcatatactggaatagttctgttttagttaaggtttccattgttatgaagagacacca 162

                                                                       
Query: 541 tgaccaaggcaattcctataaaggacaacatttaattgaggatggcttccaggttcagag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 tgaccaaggcaattcctataaaggacaacatttaattgaggatggcttccaggttcagag 102

                                                                       
Query: 601 gttcagtccattatcatcaaggcagaatgatgggtagcagggtccaggcagacatggtgc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 gttcagtccattatcatcaaggcagaatgatgggtagcagggtccaggcagacatggtgc 42

                                                    
Query: 661 tggagaggctgaaagatctacatctgcatctgactgtggct 701
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 41  tggagaggctgaaagatctacatctgcatctgactgtggct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 762
Length of database: 1161
Length adjustment: 10
Effective length of query: 752
Effective length of database: 1151
Effective search space:   865552
Effective search space used:   865552
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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