Query= MSMg01no141_d18.b1 MSMg01no141_d18.b1 CHROMAT_FILE:
MSMg01no141_d18.b1 PHD_FILE: MSMg01no141_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:24 2005
(636 letters)
>mm_chr1_188798006_188799042
Length = 1037
Score = 986 bits (510), Expect = 0.0
Identities = 561/584 (96%), Gaps = 12/584 (2%)
Strand = Plus / Minus
Query: 1 gacagaaacaaacatttagaaggggaaatgtccactttaaataagtggtccaagttttgg 60
||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct: 584 gacagaaacaaacatttagaaggggaaatgtaaacattaaataagtggtctaagttttgg 525
Query: 61 g--------ggtttttttgttt-tttgt---ttttgtttttttacatgagaaaaggaaac 108
| ||||||||||||| ||||| |||||||||||||||||||||||| ||||
Sbjct: 524 gggttttttggtttttttgtttgtttgtttgttttgtttttttacatgagaaaagaaaac 465
Query: 109 tacaatcacaagtgatgtgttctgagaattaaactacagaaaagcgtgatagcaagatga 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tacaatcacaagtgatgtgttctgagaattaaactacagaaaagcgtgatagcaagatga 405
Query: 169 gctgtgatagaactagacacataccgtatctagcaagagctgagggaggtactaggtgct 228
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gctgtgatagaactcgacacacaccgtatctagcaagagctgagggaggtactaggtgct 345
Query: 229 attatttccatcttgagtctattgatgtgttggttgcactacttagcctgttgcactact 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 attatttccatcttgagtctattgatgtgttggttgcactacttagcctgttgcactact 285
Query: 289 gggaagtgatagggcccagtaggggtgtgatgattatctttggcatcttgacccaaccta 348
||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||
Sbjct: 284 gggaagtgatagggcccagtaagggtgtgatggttagctttggcatcttgacccaaccta 225
Query: 349 gatcacgtgaaaatggtcaatgaggggttgtcccctttaaattggtcctagggcatgtct 408
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 gatcatgtgaaaatggtcaatgaggggttgtcccctttaaattggtcctagggcatgtct 165
Query: 409 gctgtgggaatgctctaagttaactgatatgaaagtacccagcccactttaacaccattc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 gctgtgggaatgctctaagttaactgatatgaaagtacccagcccactttaacaccattc 105
Query: 469 cctggcaggaactctgaactgtctctgtggagaaatggacttgagaacaagcaagtgagc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 cctggcaggaactctgaactgtctctgtggagaaatggacttgagaacaagcaagtgagc 45
Query: 529 tttcatttatgtctgctagactgtggatgtgatgatgtagctga 572
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 tttcatttatgtctgctagactgtggatgtgatgatgtagctga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1037
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1027
Effective search space: 642902
Effective search space used: 642902
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no141_d18.g1 MSMg01no141_d18.g1 CHROMAT_FILE:
MSMg01no141_d18.g1 PHD_FILE: MSMg01no141_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:24 2005
(755 letters)
>mm_chr1_188684675_188685830
Length = 1156
Score = 1367 bits (707), Expect = 0.0
Identities = 744/757 (98%), Gaps = 5/757 (0%)
Strand = Plus / Plus
Query: 2 atcattttgatttttctagttttcccttataag--gcaagtgtctccatgtgctgtgacc 59
||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||
Sbjct: 202 atcattttgatttttctagttttcc-tt-taagtggcaagtgtctccatgtgctgtgacc 259
Query: 60 ccc-gcaatcactgcagctgcaagccctccatgcaccgctaaagctgtgggtttgttttt 118
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ccccgcaatcactgcagctgcaagccctccatgcaccgctaaagctgtgggtttgttttt 319
Query: 119 ggacttcagttaagatgatgattggcacataattaccaatgaccagaaaagaatggactg 178
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggacttcagttaaggcgatgattggcacataattaccaatgaccagaaaagaatggactg 379
Query: 179 tgatttcagaatcattttcttgaagctattgaatgattttcatcaagaaaatttcccaac 238
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgatttcagaatcatcttcttgaagctattgaatgattttcatcaagaaaatttcccaac 439
Query: 239 ggcaggatctatagtaaacatgctatggtaaccagtgacaacccgagcaaaaattgagtt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggcaggatctatagtaaacatgctatggtaaccagtgacaacccgagcaaaaattgagtt 499
Query: 299 gttaggctaagtcccttgtggttgtcttcccagctgtttatctctctgttcccacaactg 358
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gttaggctaagtcccttgtggctgtcttcccagctgtttatctctctgttcccacaactg 559
Query: 359 agtgtcatattctttctcttgtctgggaagtggtttcttacatatcttcaggtaaaaacc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agtgtcatattctttctcttgtctgggaagtggtttcttacatatcttcaggtaaaaacc 619
Query: 419 accaagatttaaaggtaatgagtgtttccatttgaatagaaaagaatttgcatgaaaact 478
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 accaagatttaaatgtaatgagtgtttccatttgaatagaaaagaatttgcatgaaaact 679
Query: 479 ttagaggaatgattttgaaatcaaagctctgtgtgtgtgaatcaaagtctttgtaggacg 538
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttagaggaatgattttgaactcgaagctctgtgtgtgtgaatcaaagtctttgtaggacg 739
Query: 539 aatgagacactgtggtcctggaaaagaaatcccacaggggatcaggagatggggttttcc 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aatgagacactgtggtcctggaaaagaaatcccacaggggatcaggagatggggttttcc 799
Query: 599 cctcagactcgctcattattgtcatttttgttttgagacaggactggactctgtggctca 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 cctcagactcgctcattattgtcatttttgttttgagacaggactggactctgtggctca 859
Query: 659 agatgacttcacacttgaggcaattctcttgcttcatcatctcagggtttgggatgacag 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 agatgacttcacacttgaggcaattctcttgcttcatcatctcagggtttgggatgacag 919
Query: 719 gaatggaccaccgtgcctggcacgtgttctgctcttc 755
|||||||||||||||||||||||||| ||||||||||
Sbjct: 920 gaatggaccaccgtgcctggcacgtggtctgctcttc 956
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 755
Length of database: 1156
Length adjustment: 10
Effective length of query: 745
Effective length of database: 1146
Effective search space: 853770
Effective search space used: 853770
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
