Query= MSMg01no141_f19.b1 MSMg01no141_f19.b1 CHROMAT_FILE:
MSMg01no141_f19.b1 PHD_FILE: MSMg01no141_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:40 2005
(670 letters)
>mm_chr1_56837149_56838218
Length = 1070
Score = 1197 bits (619), Expect = 0.0
Identities = 658/671 (98%), Gaps = 2/671 (0%)
Strand = Plus / Plus
Query: 1 taaatcttgaatttttgcaaatgctgagacccttcgcttttattcagaatccataatagt 60
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 201 taaatcttgaatttttgcaaatgctgagatgtttcgcttttattcagaatatataatagt 260
Query: 61 tagggattgaggtttagccagagcgcctttatgcaaaggacacatatgtaactatgtaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagggattgaggtttagccagagcgcctttatgcaaaggacacatatgtaactatgtaca 320
Query: 121 gtaaaaagctgtacatctggcatgctggggggaaattggaggcatcagtcagtcaaaagt 180
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 321 gtaaaaagctgtacatctggcatgttgggggaaaattggaggcatcagtcagtcaaaagt 380
Query: 181 tctgactaacaatttcattgcctttcatatttcttgttttctgtcttggcctctctacta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgactaacaatttcattgcctttcatatttcttgttttctgtcttggcctctctacta 440
Query: 241 aagcctagacgggggaatgagctgacaatttggttccatgttgcccaaagtctactgcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagcctagacgggggaatgagctgacaatttggttccatgttgcccaaagtctactgcag 500
Query: 301 cagaggcagagctgggtcacactgcccaggcaagcctcagaacagactaagagagctccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagaggcagagctgggtcacactgcccaggcaagcctcagaacagactaagagagctccc 560
Query: 361 aactcacagactgtgggacccaggtgacactgggacaaaagaggggcaagaggagacatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aactcacagactgtgggacccaggtgacactgggacaaaagaggggcaagaggagacatg 620
Query: 421 agatacattcaaataggtttgtgtcagaaggtgggcagagtcatctgttggcctattctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agatacattcaaataggtttgtgtcagaaggtgggcagagtcatctgttggcctattctc 680
Query: 481 acatgggtataatacatagggactattttttttaaagtatgatggtacaagctaatacac 540
||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||
Sbjct: 681 acatgggtataatacataggggctatttttttttaagtatgatggtacaagctagtacac 740
Query: 541 attcaatagaatcagtaatttgaattttgactgtgaattttgtccagggtatttaaaccc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 attcaatagaatcagtaatttgaattttgactgtgaattttgtccagggtatttaaaccc 800
Query: 601 tcatgatgctgaccagaggc-agtgacgtcctgctcccaggggtcctgggattaggaggg 659
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 801 tcatgatgctgaccagaggcca-tgatgtcctgctcccaggggtcctgggattaggaggg 859
Query: 660 aacatagtcaa 670
|||||||||||
Sbjct: 860 aacatagtcaa 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no141_f19.g1 MSMg01no141_f19.g1 CHROMAT_FILE:
MSMg01no141_f19.g1 PHD_FILE: MSMg01no141_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:40 2005
(351 letters)
>mm_chr1_56994657_56995407
Length = 751
Score = 617 bits (319), Expect = 0.0
Identities = 339/349 (97%), Gaps = 6/349 (1%)
Strand = Plus / Minus
Query: 1 ttaaggctttgccttctggagacaaagtacttcaacagtacaaaattgaaagttttaagt 60
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 498 ttaaggctttggcttctggagacaaagtacttcaccagtacaaaattgaaagttttaagt 439
Query: 61 aggttttgagggctaaaaatgaaatgatatggacaacgcaaagattaaagttcttttttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aggttttgagggctaaaaatgaaatgatatggacaacgcaaagattaaagttcttttttc 379
Query: 121 tgaataaaatatgttacctttgtgggctaacttctgttggaaatcagataaatgttgcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tgaataaaatatgttacctttgtgggctaacttctgttggaaatcagataaatgttgcat 319
Query: 181 tgttaaaattagttgatgttaagctatggcttagttcttatgaaaacattaacataataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tgttaaaattagttgatgttaagctatggcttagttcttatgaaaacattaacataataa 259
Query: 241 ggcttgttagtaatatatgtatattatacatacatatacatgctcttaggtatgtacatg 300
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 258 ggcttgttagtaatatatgtatattatacatacatatacatgcacgtaggtatgtacatg 199
Query: 301 tgtgcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgaatatgttttg 349
|||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 198 tgtgct------tgtgtgtgtgtgtgtgtgtgtgtatgaatatgttttg 156
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 751
Length adjustment: 9
Effective length of query: 342
Effective length of database: 742
Effective search space: 253764
Effective search space used: 253764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
