Query= MSMg01no141_j11.b1 MSMg01no141_j11.b1 CHROMAT_FILE:
MSMg01no141_j11.b1 PHD_FILE: MSMg01no141_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:09 2005
(723 letters)
>mm_chr1_79511923_79513045
Length = 1123
Score = 965 bits (499), Expect = 0.0
Identities = 505/507 (99%)
Strand = Plus / Minus
Query: 217 ttcaggaaaatttcccctgtgccaatgtcctcgaggctcttccccactttcttttctatt 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1123 ttcaggaaaatttcccctgtgccaatgtcctcgaggctcttccccactttcttttctatt 1064
Query: 277 agtttcactttacctggttttatgtggaagtgcttgatccacttgtacttgagctttgta 336
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1063 agtttcactttacctggttttatgtggaagtgcttgatccacttggacttgagctttgta 1004
Query: 337 caaggcgataagaatggatcgatttgcattcttctacatgctaaccaccagttgagccag 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1003 caaggcgataagaatggatcgatttgcattcttctacatgctaaccaccagttgagccag 944
Query: 397 caccatttgttgaaaatgctaatgccaccatattttaatggttccttttggatttgtata 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943 caccatttgttgaaaatgctaatgccaccatattttaatggttccttttggatttgtata 884
Query: 457 gttaaattcttgattcagcactcatagcccatcctgctctctcatctcattatgtagtcc 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 gttaaattcttgattcagcactcatagcccatcctgctctctcatctcattatgtagtcc 824
Query: 517 cctctctatttgtcacactctccactctaacccacttccactagtttttctgtattctaa 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 cctctctatttgtcacactctccactctaacccacttccactagtttttctgtattctaa 764
Query: 577 tttgatctagaagccccattataactgaacacactttcttggagtctgatgtttgcccat 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 tttgatctagaagccccattataactgaacacactttcttggagtctgatgtttgcccat 704
Query: 637 tttatttccttcttacttctgaaattccattattaataactcaccccaagtcccagttct 696
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 703 tttatttccttcttacttctgaaattccattattaaaaactcaccccaagtcccagttct 644
Query: 697 gatagcattttcaatatattatatggc 723
|||||||||||||||||||||||||||
Sbjct: 643 gatagcattttcaatatattatatggc 617
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 723
Length of database: 1123
Length adjustment: 10
Effective length of query: 713
Effective length of database: 1113
Effective search space: 793569
Effective search space used: 793569
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no141_j11.g1 MSMg01no141_j11.g1 CHROMAT_FILE:
MSMg01no141_j11.g1 PHD_FILE: MSMg01no141_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:10 2005
(693 letters)
>mm_chr1_79374999_79376086
Length = 1088
Score = 1276 bits (660), Expect = 0.0
Identities = 683/693 (98%), Gaps = 5/693 (0%)
Strand = Plus / Plus
Query: 1 cagccatggnccagtgggatactcccacctcctgactctggcactctagaagcgacaagg 60
||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 201 cagccatggcccagtgggatactcccacctcttgactctggcactctagaag-gacaagg 259
Query: 61 cagatgaagggaccataacaatagtaacgcagcccaagtactctcaattcagaacccgtt 120
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 caga----gggaccataacaatagtaacgcagcccaagtactctcaattcagaacccgtt 315
Query: 121 attcacagctataaagaaggctatatatagttcacaagaagaaagtggtggtctgagttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 attcacagctataaagaaggctatatatagttcacaagaagaaagtggtggtctgagttg 375
Query: 181 gagctatttgaatatataactttctgattcttcaattaatgattttggtgatgttttcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gagctatttgaatatataactttctgattcttcaattaatgattttggtgatgttttcat 435
Query: 241 atgtatatatcagcacattctgttctgatttgtccttcagcgtggaccccagcgctttgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 atgtatatatcagcacattctgttctgatttgtccttcagcgtggaccccagcgctttgc 495
Query: 301 tgttactttactccccaagatcagctcttgcttttgtgctcatgtgcacatcccattgct 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 496 tgttactttactccccaagatcagctcttgcttttgtgctcatgtacacatcccattgct 555
Query: 361 tcaatcttgcttcccactcctcttggcccctcacagtctcctttcttttgtgcatgtgta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tcaatcttgcttcccactcctcttggcccctcacagtctcctttcttttgtgcatgtgta 615
Query: 421 gtttgtatgcattcatcagatacaaaatgcaatattctctcagaggtatatttgttaaaa 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 616 gtttgtatgcattcatcagatacaaaatgcaatattctctcagaggtatatttgttaaca 675
Query: 481 agaaagttatttctttaaaaatatttttaaaatatttgaaagtgtgaaaaaataactcca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 agaaagttatttctttaaaaatatttttaaaatatttgaaagtgtgaaaaaataactcca 735
Query: 541 cagaaaatggtctcacttcctttgttcttttgtttgatagacaagtaccctcgacttatt 600
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 736 cagaaaatggtctcacttcctttgttcttttgtttgatagacaagtacccttgacttatt 795
Query: 601 tattgcttagatttgttcttttacaatttcatacatgtatatagtgcatgttatatgtat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 tattgcttagatttgttcttttacaatttcatacatgtatatagtgcatgttatatgtat 855
Query: 661 gtatataggtatacctatttatagatgtgtata 693
|||||||||||||||||||||||||||||||||
Sbjct: 856 gtatataggtatacctatttatagatgtgtata 888
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1088
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1078
Effective search space: 736274
Effective search space used: 736274
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
