Query= MSMg01no142_c17.b1 MSMg01no142_c17.b1 CHROMAT_FILE:
MSMg01no142_c17.b1 PHD_FILE: MSMg01no142_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:29 2005
(655 letters)
>mm_chr1_87869513_87870566
Length = 1054
Score = 1172 bits (606), Expect = 0.0
Identities = 640/658 (97%), Gaps = 13/658 (1%)
Strand = Plus / Plus
Query: 1 ggctgctaagatgctggactggatgccaggcccct---aagagggcaatccttaccatgt 57
|||||||||||||||||||||||||||||| | ||| |||||||||||| ||||
Sbjct: 201 ggctgctaagatgctggactggatgccagg----tgggaagtgggcaatccttagaatgt 256
Query: 58 tgctgcagctgcttatgtgtgaacaaaactggcctgattcactctaaaccgaaccagatt 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tgctgcagctgcttatgtgtgaacaaaactggcctgattcactctaaaccgaaccagatt 316
Query: 118 tccaaagccaagtactgtttgtccagccttccttgtcccttcttagccttctgagaagta 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tccaaagccaagtactgtttgtccagccttccttgtcccttcttagccttctgagaagta 376
Query: 178 tgacaatgcacttggaaatacaaccagcttcttcaaataaaatgattccgtatttaagtt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tgacaatgcacttggaaatacaaccagcttcttcaaataaaatgattccgtatttaagtt 436
Query: 238 gggtcttatgaatggaaatatgaaagtgtatcccacaataagttaggatggcagtgtttt 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gggtcttatgaatggaaatatgaaagtgtatcccacaataagttaggatggcagtgtttt 496
Query: 298 atttggcactgggtaagcatgtgagcctttgaacaagtcccatttcaggcattcagagca 357
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 497 atttggcactgggtaagcatgtgagccattgaacaagtcccatttcaggcattcagagca 556
Query: 358 acatcacgcagcaaagactgcacctcctctaagaagaacagtaatatgcatttcttgaat 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 acatcacgcagcaaagactgcacctcctctaagaagaacagtaatatgcatttcttgaat 616
Query: 418 tgagtcaactatgaaaatgggtttcaccaaaaccaccaaagaaaatggggggaaatttga 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tgagtcaactatgaaaatgggtttcaccaaaaccaccaaagaaaatggggggaaatttga 676
Query: 478 cttaataagatgatagaaatacttcctttaaaatttggttagactcactcttgtactagt 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 cttaataagatgatagaaatacttcctttaaaatttggttagactcactcttgtactagt 736
Query: 538 agttgggggctgtgtaaaacatcacacacacacacacacacacacacacacaaagctggt 597
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 737 agttgggggctgtgtaaaacatcacacacacacacacacacacaca------aagctggt 790
Query: 598 ctttttgctgccatggaacgagttttctttaaaagactatgtagtgagggtgctcagc 655
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 791 ctttttgctgccatggaaccagttttctttaaaagactatgtagtgagggtgctcagc 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1054
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1044
Effective search space: 673380
Effective search space used: 673380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no142_c17.g1 MSMg01no142_c17.g1 CHROMAT_FILE:
MSMg01no142_c17.g1 PHD_FILE: MSMg01no142_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:29 2005
(639 letters)
>mm_chr1_87958560_87959598
Length = 1039
Score = 996 bits (515), Expect = 0.0
Identities = 593/643 (92%), Gaps = 41/643 (6%)
Strand = Plus / Minus
Query: 1 tgctatgtagagagaccctgtctc----aacttacaaaacaacgggctgccgagatggct 56
|||||||||||||||||||||||| || |||||||||||||||| |||||||||
Sbjct: 823 tgctatgtagagagaccctgtctcaaaaaa---acaaaacaacgggctggtgagatggct 767
Query: 57 cagctgctcttccggaagtcctgagtttaatttccagcaatcgcacatggtggcttacaa 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 cagctgctcttccggaagtcctgagtttaatttccagcaatcgcacatggtggcttacaa 707
Query: 117 ccatctataaggggatctgatgccctcttctggcatgcaggtgtacatgcagacagaaca 176
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ccatctataaagggatctgatgccctcttctggcatgcaggtgtacatgcagacagaaca 647
Query: 177 ttcatacattaaacaaatacataaattaaaaacacagaaatattaaaaaacaaaacaaaa 236
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 646 ttcatacattaaacaaatacataaattaaaaacacagaaatattaaaaaacaaagcaaaa 587
Query: 237 acagaagtatgtgataatatataggaaaaaaatgtcaaaggaagaaacaatgctgtgtat 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 586 acagaagtatgtgataatatataggaaaaaaatgtcaaaggaagaaacaatgctgtatat 527
Query: 297 tctgttctcctcctagcaaaaagttcctaatgtatcttcaggattttgaaatgacagttg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tctgttctcctcctagcaaaaagttcctaatgtatcttcaggattttgaaatgacagttg 467
Query: 357 tgacttttacttactctcttctttaactaaaaaattatgtatatggatgatgtatgtgtg 416
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tgacttttacttactctcttctttaactaaaaaattatgtatatggatgatgtatgt--- 410
Query: 417 tgtgtccgtgtgtccgtgtgtctgtgtgtctgtgtgtccgtgtgtctgtgtgtccgtgtg 476
||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 409 ---------------gtgtgtctgtgtgtccatgtgtccgtgtgtctgtgtgtccgtctg 365
Query: 477 tccatgtccctgtaccacatgcatgcctactgcccttggaaaccaaaagtgagcatcagg 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tccatgtccctgtaccacatgcatgcctactgcccttggaaaccaaaagtgagcatcagg 305
Query: 537 tcccttggagttggcattactgatggttgtaagccaccatgtgggtgctgggaaccaaac 596
||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 304 tccct---------------tgatggttgtaagcca-catgtgggtgctgggaaccaaac 261
Query: 597 cttagtcctttggagagcagccggtgctcttaaccaccgagtt 639
||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 260 cttagtcctttggagagcagccggtgctcttaatcaccgagtt 218
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
