MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-142G06
Chromosome	1 (Build37)
Map Location	44,128,309 - 44,129,022
singlet/doublet	singlet
Overlap gene	EG666713
Upstream gene	Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2, 1500015O10Rik, Uxs1, LOC666676, LOC100042303, EG666690, Tpp2, A530098C11Rik
Downstream gene	1700029F09Rik, Kdelc1, Bivm, Ercc5, 4832428D23Rik, LOC435619, Txn-ps1, Gulp1, LOC100041738, LOC100041752
Link	Open Mouse BAC browser

Click to get alignment info.

name	Tgfbrap1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73122 MGI:2447427
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	AI597479 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:98404 MGI:2138299
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fhl2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14200 MGI:1338762
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG666642 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666642 MGI:3643593
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 mRNAs, 995 ESTs, 4 Proteins

name	EG666644 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666644 MGI:3643588
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	LOC100041644 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041644
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Nck2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17974 MGI:1306821
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1500015O10Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78896 MGI:1926146
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Uxs1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67883 MGI:1915133
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666676 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666676
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 682 ESTs, 34 Proteins pseudo : _no_value

name	LOC100042303 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042303
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 708 ESTs

name	EG666690 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666690 MGI:3647219
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 Proteins pseudo : _no_value

name	Tpp2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22019 MGI:102724
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	A530098C11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433294 MGI:3611450
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG666713 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666713 MGI:3647616
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	1700029F09Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75623 MGI:1922873
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 76 ESTs, 4 Proteins

name	Kdelc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72050 MGI:1919300
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Bivm (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:246229 MGI:2179809
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ercc5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22592 MGI:103582
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4832428D23Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:403183 MGI:2685837
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC435619 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:435619
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 Proteins pseudo : _no_value

name	Txn-ps1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22167 MGI:98875
definition	note : thioredoxin, pseudogene 1 pseudo : _no_value

name	Gulp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70676 MGI:1920407
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100041738 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041738
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	LOC100041752 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041752
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Tgfbrap1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:68299761 GeneID:73122 MGI:2447427
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transforming growth factor, beta receptor associated protein 1 transcript_id : NM_001013025.2

name	AI597479 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:19527037 GeneID:98404 MGI:2138299
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence AI597479 transcript_id : NM_133818.1

name	Fhl2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803241 GeneID:14200 MGI:1338762
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : four and a half LIM domains 2 transcript_id : NM_010212.3

name	EG666642 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149233844 GeneID:666642 MGI:3643593
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 mRNAs, 995 ESTs, 4 Proteins product : predicted gene, EG666642 transcript_id : XM_985134.2

name	EG666644 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149233807 GeneID:666644 MGI:3643588
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : predicted gene, EG666644 transcript_id : XM_001476725.1

name	Nck2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31543312 GeneID:17974 MGI:1306821
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : non-catalytic region of tyrosine kinase adaptor protein 2 transcript_id : NM_010879.2

name	1500015O10Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142360223 GeneID:78896 MGI:1926146
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1500015O10 gene transcript_id : NM_024283.2

name	Uxs1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:28076898 GeneID:67883 MGI:1915133
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : UDP-glucuronate decarboxylase 1 transcript_id : NM_026430.1

name	LOC100042303 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149233849 GeneID:100042303
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 708 ESTs product : hypothetical protein LOC100042303 transcript_id : XM_001478053.1

name	Tpp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803002 GeneID:22019 MGI:102724
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tripeptidyl peptidase II transcript_id : NM_009418.2

name	A530098C11Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:85701483 GeneID:433294 MGI:3611450
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA A530098C11 gene transcript_id : NM_001013799.1

name	EG666713 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149233809 GeneID:666713 MGI:3647616
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : predicted gene, EG666713 transcript_id : XM_985572.2

name	1700029F09Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94363294 GeneID:75623 MGI:1922873
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 73 ESTs, 4 Proteins product : RIKEN cDNA 1700029F09 gene, transcript variant 7 transcript_id : XM_899759.2

name	1700029F09Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94363290 GeneID:75623 MGI:1922873
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 47 ESTs, 4 Proteins product : RIKEN cDNA 1700029F09 gene, transcript variant 9 transcript_id : XM_899774.2

name	1700029F09Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149233851 GeneID:75623 MGI:1922873
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 53 ESTs, 4 Proteins product : RIKEN cDNA 1700029F09 gene, transcript variant 10 transcript_id : XM_899782.3

name	Kdelc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801753 GeneID:72050 MGI:1919300
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : KDEL (Lys-Asp-Glu-Leu) containing 1 transcript_id : NM_023645.3

name	Bivm (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142363741 GeneID:246229 MGI:2179809
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : basic, immunoglobulin-like variable motif containing transcript_id : NM_144558.3

name	Ercc5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6756022 GeneID:22592 MGI:103582
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : excision repair cross-complementing rodent repair deficiency, complementation group 5 transcript_id : NM_011729.1

name	4832428D23Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142373908 GeneID:403183 MGI:2685837
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4832428D23 gene transcript_id : NM_207281.2

name	Gulp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130377 GeneID:70676 MGI:1920407
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GULP, engulfment adaptor PTB domain containing 1 transcript_id : NM_027506.2

name	Gulp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:28201935 GeneID:70676 MGI:1920407
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GULP, engulfment adaptor PTB domain containing 1 transcript_id : NM_028450.1

name	Tgfbrap1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:67906170 CCDS:CCDS14920.1 GeneID:73122 MGI:2447427
definition	GO_function : GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 note : TGF beta receptor associated protein 1; tansforming growth factor, beta receptor associated protein 1 product : TGF beta receptor associated protein -1 protein_id : NP_001013043.1

name	AI597479 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527038 CCDS:CCDS14921.1 GeneID:98404 MGI:2138299
definition	codon_start : 1 product : hypothetical protein LOC98404 protein_id : NP_598579.1

name	Fhl2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753866 CCDS:CCDS14922.1 GeneID:14200 MGI:1338762
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IDA] codon_start : 1 product : four and a half LIM domains 2 protein_id : NP_034342.1

name	EG666642 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94363330 GeneID:666642 MGI:3643593
definition	codon_start : 1 product : similar to ribosomal protein protein_id : XP_990228.1

name	EG666644 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149233808 GeneID:666644 MGI:3643588
definition	codon_start : 1 product : similar to Ac2-210 protein_id : XP_001476775.1

name	Nck2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543313 CCDS:CCDS14924.1 GeneID:17974 MGI:1306821
definition	GO_component : GO:0012506 - vesicle membrane [Evidence IDA] GO_function : GO:0016301 - kinase activity [Evidence IEA] GO_process : GO:0007015 - actin filament organization [Evidence IMP]; GO:0016477 - cell migration [Evidence IMP]; GO:0030032 - lamellipodium biogenesis [Evidence IMP] codon_start : 1 exception : mismatches in translation product : non-catalytic region of tyrosine kinase adaptor protein 2 protein_id : NP_035009.2

name	1500015O10Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13195694 CCDS:CCDS14925.1 GeneID:78896 MGI:1926146
definition	codon_start : 1 exception : mismatches in translation product : esophageal cancer related gene 4 protein protein_id : NP_077245.1

name	Uxs1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28076899 GeneID:67883 MGI:1915133
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0050662 - coenzyme binding [Evidence IEA]; GO:0016829 - lyase activity [Evidence IEA]; GO:0048040 - UDP-glucuronate decarboxylase activity [Evidence IEA] GO_process : GO:0044237 - cellular metabolism [Evidence IEA] codon_start : 1 product : UDP-glucuronate decarboxylase 1 protein_id : NP_080706.1

name	LOC100042303 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149233850 GeneID:100042303
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478103.1

name	Tpp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678419 CCDS:CCDS14926.1 GeneID:22019 MGI:102724
definition	GO_function : GO:0004177 - aminopeptidase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]; GO:0004289 - subtilase activity [Evidence IEA]; GO:0004294 - tripeptidyl-peptidase II activity [Evidence IEA] GO_process : GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 product : tripeptidyl peptidase II protein_id : NP_033444.1

name	A530098C11Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701484 CCDS:CCDS14927.1 GeneID:433294 MGI:3611450
definition	GO_function : GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 product : hypothetical protein LOC433294 protein_id : NP_001013821.1

name	EG666713 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149233810 GeneID:666713 MGI:3647616
definition	codon_start : 1 product : similar to hCG2011852 protein_id : XP_990666.2

name	1700029F09Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82878925 GeneID:75623 MGI:1922873
definition	codon_start : 1 product : hypothetical protein LOC75623 isoform 10 protein_id : XP_904875.1

name	1700029F09Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82878919 GeneID:75623 MGI:1922873
definition	codon_start : 1 product : hypothetical protein LOC75623 isoform 7 protein_id : XP_904852.1

name	1700029F09Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82878923 GeneID:75623 MGI:1922873
definition	codon_start : 1 product : hypothetical protein LOC75623 isoform 9 protein_id : XP_904867.1

name	Kdelc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:12963767 CCDS:CCDS14929.1 GeneID:72050 MGI:1919300
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA] codon_start : 1 note : endoplasmic reticulum-resident KDEL protein; KDEL containing protein 1 product : KDEL (Lys-Asp-Glu-Leu) containing 1 protein_id : NP_076134.1

name	Bivm (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328350 CCDS:CCDS14930.1 GeneID:246229 MGI:2179809
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 exception : mismatches in translation product : basic, immunoglobulin-like variable motif containing protein_id : NP_653141.2

name	Ercc5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6756023 GeneID:22592 MGI:103582
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004518 - nuclease activity [Evidence IEA]; GO:0003697 - single-stranded DNA binding [Evidence IEA] GO_process : GO:0008340 - determination of adult life span [Evidence IMP]; GO:0006281 - DNA repair [Evidence IMP]; GO:0006289 - nucleotide-excision repair [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IEA]; GO:0009411 - response to UV [Evidence IMP] codon_start : 1 exception : mismatches in translation note : xeroderma pigmentosum, complementation group G; excision repair cross-complementing rodent repair deficiency,complementation group 5 product : excision repair cross-complementing rodent repair deficiency, complementation group 5 protein_id : NP_035859.1

name	4832428D23Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46402315 CCDS:CCDS14931.1 GeneID:403183 MGI:2685837
definition	codon_start : 1 product : hypothetical protein LOC403183 protein_id : NP_997164.1

name	Gulp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21311823 GeneID:70676 MGI:1920407
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0006911 - phagocytosis, engulfment [Evidence ISS] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; CED 6 product : PTB domain adaptor protein CED-6 isoform 1 protein_id : NP_081782.1

name	Gulp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28201936 GeneID:70676 MGI:1920407
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0006911 - phagocytosis, engulfment [Evidence ISS] codon_start : 1 exception : mismatches in translation note : isoform 2 is encoded by transcript variant 2; CED 6 product : PTB domain adaptor protein CED-6 isoform 2 protein_id : NP_082726.1

name	LOC100041644 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041644
definition	number : 1 pseudo : _no_value

name	LOC100041644 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041644
definition	number : 2 pseudo : _no_value

name	EG666690 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666690
definition	number : 1 pseudo : _no_value

name	EG666690 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666690
definition	number : 2 pseudo : _no_value

name	EG666690 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666690
definition	number : 3 pseudo : _no_value

name	LOC435619 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:435619
definition	number : 2 pseudo : _no_value

name	LOC435619 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:435619
definition	number : 1 pseudo : _no_value

name	LOC100041738 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041738
definition	number : 1 pseudo : _no_value

name	LOC100041738 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041738
definition	number : 2 pseudo : _no_value

name	LOC100041752 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041752
definition	number : 2 pseudo : _no_value

name	LOC100041752 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041752
definition	number : 1 pseudo : _no_value

name	(CDS detail)
type	STS
link
xref	UniSTS:178385
definition	standard_name : AI597479

name	(CDS detail)
type	STS
link
xref	UniSTS:128842
definition	standard_name : D1Mit174

name	(CDS detail)
type	STS
link
xref	UniSTS:273521
definition	standard_name : PMC86299P1

name	(CDS detail)
type	STS
link
xref	UniSTS:123073
definition	standard_name : 11.MMHAP28FRD8.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:128555
definition	standard_name : D1Mit213

name	(CDS detail)
type	STS
link
xref	UniSTS:128735
definition	standard_name : D1Mit375

name	(CDS detail)
type	STS
link
xref	UniSTS:122852
definition	standard_name : 06.MMHAP25FRB9.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:128591
definition	standard_name : D1Mit248

name	(CDS detail)
type	STS
link
xref	UniSTS:207153
definition	standard_name : AF043260

name	(CDS detail)
type	STS
link
xref	UniSTS:190496
definition	standard_name : fb36h10.x1

name	(CDS detail)
type	STS
link
xref	UniSTS:165077
definition	standard_name : AI451869

name	(CDS detail)
type	STS
link
xref	UniSTS:178386
definition	standard_name : AI649125

name	(CDS detail)
type	STS
link
xref	UniSTS:178388
definition	standard_name : AW550562

name	(CDS detail)
type	STS
link
xref	UniSTS:125412
definition	standard_name : MHAa87a6.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:185923
definition	standard_name : AI639580

name	(CDS detail)
type	STS
link
xref	UniSTS:125865
definition	standard_name : X81323

name	(CDS detail)
type	STS
link
xref	UniSTS:163248
definition	standard_name : X81323

name	(CDS detail)
type	STS
link
xref	UniSTS:218419
definition	standard_name : RH135142

name	(CDS detail)
type	STS
link
xref	UniSTS:234121
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:124781
definition	standard_name : D18409

name	(CDS detail)
type	STS
link
xref	UniSTS:164111
definition	standard_name : AI854267

name	(CDS detail)
type	STS
link
xref	UniSTS:144800
definition	standard_name : Ercc5

name	(CDS detail)
type	STS
link
xref	UniSTS:144799
definition	standard_name : Ercc5

name	(CDS detail)
type	STS
link
xref	UniSTS:178387
definition	standard_name : AI451477

name	(CDS detail)
type	STS
link
xref	UniSTS:119853
definition	standard_name : RH94605

name	(CDS detail)
type	STS
link
xref	UniSTS:179004
definition	standard_name : AW550880

name	(CDS detail)
type	STS
link
xref	UniSTS:234122
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:163022
definition	standard_name : RH126314

name	Txn-ps1 (CDS detail)
type	misc_feature
link	vega ensembl
xref
definition	pseudo : _no_value

name	LOC666676 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149233848 GeneID:666676
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 682 ESTs, 34 Proteins product : similar to ADP-ribosylation factor pseudo : _no_value transcript_id : XR_033514.1

clone name	MSMg01-507G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-158K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478E09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466H12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-513E03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-406M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-362M06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-364G18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367C18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535I08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-476H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-274A11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-350B05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-205C12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-155E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-413A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-413A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-490B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-305J17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-412K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-093N23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-510K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-338O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-356F05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-323D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-512A24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-081C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-416N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110K07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362B01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-422I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-295F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-196J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359N19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-399L18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-475O18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-146L24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-137C08
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-493B13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-101F13
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-113A20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359B16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-455E04
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-065A18
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-362I10
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-366N18
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-420P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-128G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-233A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-392P08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-138F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-432I15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-142G06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-142E08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-275H08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-292N08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519A13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-058E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-495M03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-463F05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-188C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-360I16
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-143O20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-124C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-135K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-423O08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-086B20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488D09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-403L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-235N03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-513F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421G20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-276B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-528M11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-236E06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-075D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080D04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-194O01
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-384F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-159M12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351L09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-493I07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-165E16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-094K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-180E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-420L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-162G04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-328O08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-366O14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-197E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-055G02
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-511C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255A01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009J24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-176A15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-008K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198H21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-328J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264I01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-211G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193N13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-091A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231H20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-052A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208N07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-341C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057I24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-055A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082B16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-082H21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-148L19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-052N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186G12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231H07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101J22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-092B06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-263D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251L12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-014C14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-232G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168P10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-083B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265B13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-190E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135M18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-333G08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-010B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290C16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-115O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251L02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-240N03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-145N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305F10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-254M04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-097C19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-041F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046H06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-235I10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-305K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278J24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-058H11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-223D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327H10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-282D16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-171K08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-235G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115D02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-337E15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-065K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037B04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231A03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-324H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112E11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-215B13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-042C12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-141L11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-179P01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-345E18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-040E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-264D08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124P06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-057C09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-038P19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-296C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036D20
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-142G06.T7 (MSMg01no142_g06.b1)	MSMg01-142G06.TJ (MSMg01no142_g06.g1)
ACC	AG347013	AG347014
length	1,240	1,226
length of high quality (start - end)	714 (90 - 803)	704 (132 - 835)
definition	CHROMAT_FILE: MSMg01no142_g06.b1 PHD_FILE: MSMg01no142_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:00 2005	CHROMAT_FILE: MSMg01no142_g06.g1 PHD_FILE: MSMg01no142_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:00 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	NCCATTCTTNNNNNNGACACTGGGCGCTAXXXXXXXXXXXXXXXXXXXXX XXCGCGGAATTCCAGTTGGTTTCTCCACCCCTTAAAAATTACTGATGGGA ACCTCTCTGAGCCAAGCACCATAAAGCAATGTTCCAAATAGTGGAAATGA TACAAGGGAAATTAGTTGTGGTTTTACCCACGAAGCTTTATTGTGGCTTT TAAGTCACTGCATGCCTGTTTTGCCTCGTTCTAAAAAGAAAAAAGACCAG ACAAAATTCACAAATGGAAGTATAGTGAGGCTGAAGTACATGAATAAGGT GAAACCACCAGCTTCAAAACCATTCAATATCAGAGGCAATAAAAAGAAGT CAAAATTAGACTTCAAGGCTAAGTTTAAAAAGATAAGCCAAGCTAAAGCA TTTTTACCTGAATATCAAAACACTCTTTGCGCAGCCATCGATAGCAGAAG GCAGGGGCTATTCCATCATGCTCCACTAAAGCAAGGAGAACTAGCAAGCA AACTATGTGTTGCTTGCACTGCTGAAAGTAGTGCATTCTACAATAAAGAG AAGAAACCTGAAAGAGGGAAACAAAACCCCTCTTTACAGGTATTTCAGCC TGGCCAACACCTGGGGGCTGATGTGGATCAAAGGAAGGAAACTCTCCCAG ACCTATCACCCTCCTCTACAAGTCAAGAACAGCCTGTTAACAGTCAAAGG ATAAAAGTCCAAGAAGATGCCCTGCAAAATGCTTTAAAGGCTAACCTCCA AATGGATCCCCTAGACGCTCCAGAATTACAGAAAACTACCAAAGCAGAAA ATGCTTTCACCTTCCCTGTGNTTCCTGAAAGTTTATTTCCTAAAGTAGGG ACCTCTTCGCCTGGTGAGTATGCAAACATGATAGATGATGATTTAGAATT TAACAGAATCTCTGAACGTGAACTAGGTTTGTATCCTGTTGTAAACGACT CGGAGACATCCACATATCTGCAGATGACATTCCTGGCAGCCGTCTGAATC CGTTACAAAGCCCTTTGTTTCTAGACCCAAAGGGATAGAAAAAAACCCTT AAATATCAAGAAATCCAACCCCCTTTGAGTCGTAAAAACACCCTCGCAAA ACTTTTGAGTTGAACCAAACTTCTCCCGAAAAGTTTTACTTTCCGGTTCC CTCAAATCCCTTAATGTGATTAAACAATTTTTGGGGTCCTCCGTGTAAGT GGTTTATATATTACAAAATCTCGTGTTGTTTAATTTTTTC	CCCAACCNNTNNNNTTAGATGGNAXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAACTGCCGAATACCGAA TGGCAGAGAAGCACCTGAACCCATGCTCAACATCCTTAACCATCAGGGAA ATGCAAATCAAAACAACCCTGAGATTCCACCTCACAGCAGTCAGAATGGC TAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAA GAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTC TGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTGCTACCGGA GGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAATGG GTAAGAAGGACACATGCTCCACTCTGTTCATAGCAGCCTTATTTATAATA GCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATATA GAAAATGTGGTACATCTACACAATGGAGTACTATTCAGCTATTAAAAAGA ATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATC CTGAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTACTCACT GATAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATACA ATTTGCTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGAACA CTATGCCCCTCCTTAGAAGTGGGAACAAAACACCCTTGGAAGGAGTTACA GAGACAAAGTTTGGAGCTGAGATGAAAGGATGGACCATGTAGAGACTGCC ATATCCAGGGATCCACCCCATAATCAGCATCCCAACGCTGACACCATTGC ATACCCTAGCAAGATTTTATTGAAAGGACCCCAATGTAGCTGTCTCTTGT GAGACTATGCCCGGGCCTAGCAAACACAAAATGGGATGCTCCCAGTCAGC TAAAGGGATGGATCACAGGGCTCCCCACTGTAGGAGCTAGAGGAAAGTAC CCCGGGACCAAAAGGGAATTGGCCCCCCCTTTGGGGGAACAACTTTATGT AATTAACCGTTCCCCGAAACCCTTGACCCTAACGGGCAATATTTCAAAAA AAGGCCCAACTCGCCCTTCTTTTAAAAAAAGGCCCCTTGGACTTGTAACA TTATAATGCCCCCAATATGTGAAACC
quality values	Open. Hide. 0 3 9 9 10 10 11 9 3 0 0 0 0 0 0 3 8 7 9 9 9 9 7 9 8 8 8 8 8 8 8 10 10 12 8 8 8 8 12 12 19 19 29 26 17 23 23 23 23 42 42 47 50 43 43 43 43 50 42 42 53 53 35 35 35 35 35 31 31 30 30 28 22 22 10 9 9 10 11 9 9 9 14 15 20 19 21 20 20 19 21 26 36 35 36 36 38 42 42 53 42 42 38 36 36 36 36 35 35 31 33 39 50 42 41 23 22 12 11 9 9 9 10 10 21 21 24 33 37 37 43 43 39 39 39 25 17 10 10 10 10 10 21 26 43 47 59 50 50 50 53 53 50 57 57 57 57 57 57 57 53 53 47 47 47 47 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 59 59 59 59 57 57 57 59 59 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 62 62 52 52 62 62 62 62 62 62 62 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 62 62 62 62 62 62 62 62 62 62 62 62 68 68 62 62 62 62 62 62 62 68 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 62 62 44 44 23 23 13 26 23 13 12 23 39 41 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 68 68 68 68 68 62 62 62 62 52 62 62 62 62 62 62 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 62 62 68 68 68 68 62 62 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 59 59 59 68 68 59 59 59 59 59 57 57 57 57 57 68 57 68 57 57 57 57 57 57 57 57 59 57 57 57 59 59 59 57 57 57 59 59 59 59 57 57 57 57 57 57 59 59 59 59 59 59 57 54 54 59 59 68 68 68 68 59 59 59 59 59 57 57 57 57 57 57 59 59 68 68 68 59 59 54 54 54 59 59 57 57 54 54 54 54 54 47 47 47 50 54 54 57 57 68 68 68 68 68 68 68 68 68 57 57 57 59 59 59 57 50 50 50 50 50 53 53 50 50 50 53 59 59 59 59 59 59 59 41 37 27 24 15 19 19 34 34 40 40 41 48 48 53 48 48 48 59 57 59 59 59 59 48 48 48 57 57 57 57 57 50 50 50 50 47 48 48 43 41 41 41 39 43 37 38 34 29 32 36 37 37 37 46 47 47 47 39 39 22 24 25 30 30 30 43 44 43 41 37 41 43 41 41 41 41 41 34 34 34 27 19 22 22 30 27 25 17 17 26 30 36 28 21 21 23 23 24 24 16 25 24 25 22 28 28 30 25 25 18 24 13 24 22 31 31 31 31 39 39 47 37 32 30 30 30 28 28 28 28 30 30 22 29 32 23 15 10 10 10 10 10 12 20 23 28 24 26 39 39 23 23 3 0 3 23 23 37 32 21 17 19 19 21 19 19 11 11 24 30 32 28 22 25 26 24 37 32 30 25 16 16 16 25 22 21 28 17 14 19 14 14 8 8 8 9 8 8 8 13 15 21 28 20 20 17 14 8 8 11 11 11 23 22 26 17 18 19 30 30 23 23 12 14 11 12 17 9 12 11 12 15 10 10 9 10 13 10 10 10 9 9 9 9 9 14 9 11 9 9 10 13 14 8 8 8 10 8 10 10 10 9 9 9 16 10 11 11 10 10 10 8 8 8 9 15 17 18 11 10 9 10 10 10 9 11 11 9 9 9 9 8 8 8 10 10 10 10 10 10 14 10 8 8 7 7 9 12 12 12 11 11 11 11 13 13 14 9 8 8 8 8 8 8 8 8 8 10 10 9 8 8 8 8 10 8 8 9 9 9 10 9 8 8 8 8 8 8 11 9 14 10 10 12 9 9 9 9 10 11 10 10 10 10 8 8 8 8 8 8 8 8 10 10 11 14 11 16 13 19 13 13 10 10 8 7 6 7 10 8 8 8 8 8 8 8 10 8 8 9 9 10 10 9 9 9 9 9 10 9 8 8 8 8 8 8 11 11 7 6 6 6 8 8 10 9 9 9 9 9 10 16 10 8 8 8 13 13 8 8 8 8 6 6 7 10 10 10 9 14 9 9 11 11 11 11 11 11 17 9 9 9 10 12 15 14 15 17 10 8 6 6 8 7 9 9 10 10 8 10 9 6 10 8 8 8 10 15 6 6 6 8 12 11 11 9 9 10 9 9 7 9 9 10 8 8 6 6 6 8 10 10 10 10 9 9 10 9 11 8 8 8 8 8 6 8 6 6 8 8 8 8 8 8 8 8 11 10 8 9 9 9 9 9 6 8 6 6 6 6 9 12 9 9 9 9 8 8 10 13 7 6 7 6 9 10 10 24 23 18 21 14 14	Open. Hide. 11 11 10 10 10 10 3 0 0 3 0 0 0 0 3 6 6 6 8 8 8 3 0 3 3 0 3 6 6 6 7 11 11 10 13 8 8 9 8 11 12 19 19 19 9 10 10 22 19 28 22 24 24 28 28 35 35 37 37 37 30 28 35 35 36 36 36 50 50 50 50 42 37 27 27 9 9 9 9 9 11 11 11 11 10 10 10 8 8 8 8 10 12 25 34 37 37 39 33 33 36 36 38 38 57 57 57 53 53 50 50 50 33 28 25 21 21 9 10 9 9 9 10 11 15 17 21 22 15 15 14 19 19 31 32 36 36 25 28 25 28 28 24 34 35 57 57 57 57 57 57 59 59 59 57 57 57 57 48 48 48 59 59 57 57 57 54 48 50 50 50 50 57 57 57 57 57 57 57 57 57 57 47 57 57 57 57 50 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 59 59 59 59 59 59 59 57 57 57 57 57 68 68 68 68 59 59 57 57 57 59 59 68 68 59 59 57 57 57 57 57 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 68 57 57 68 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 62 62 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 62 68 68 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 59 68 68 68 68 68 68 59 59 59 59 59 59 68 68 57 57 57 68 68 59 59 59 68 59 68 68 68 59 57 57 57 57 57 38 44 24 18 13 13 13 13 21 21 38 44 59 68 68 57 57 57 54 54 57 57 68 68 68 68 68 59 59 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 54 57 57 57 57 57 57 57 57 57 57 57 57 57 57 48 57 57 59 59 68 68 59 59 59 68 68 68 68 68 68 68 68 57 57 57 57 57 68 68 68 68 68 68 68 68 68 59 57 57 59 57 57 57 59 59 59 59 59 59 59 59 59 59 59 57 57 57 57 57 57 59 59 59 59 59 59 59 48 59 59 59 59 59 39 29 24 22 22 29 32 44 47 47 50 50 50 50 53 53 57 57 57 57 57 57 59 59 59 59 59 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 54 54 54 54 54 57 59 54 57 57 57 57 57 57 68 59 59 59 59 59 59 59 57 57 57 59 59 59 57 57 57 57 57 57 59 68 68 59 59 59 57 57 59 59 59 59 59 59 59 59 68 59 59 59 59 59 57 57 57 57 57 57 57 59 59 59 68 68 68 68 68 68 68 68 68 59 48 48 47 42 42 48 57 57 54 57 54 54 54 48 57 57 59 57 50 50 50 50 50 50 43 39 30 30 30 39 37 48 48 48 43 43 46 41 41 43 32 31 31 32 37 37 41 39 44 39 37 34 39 41 41 37 37 37 37 37 37 37 37 39 41 37 31 37 36 39 39 39 21 17 9 9 9 18 23 39 39 39 36 31 34 28 33 30 29 29 39 37 41 41 47 30 32 18 18 18 28 32 39 34 36 37 31 31 41 44 44 41 37 27 24 22 22 25 25 17 11 10 15 16 29 31 32 28 28 10 10 10 14 14 18 30 30 32 26 31 32 37 37 37 39 21 21 13 13 13 22 23 14 14 14 28 30 32 36 43 41 41 39 39 27 27 24 20 16 15 15 23 23 23 23 11 18 18 34 34 34 20 22 24 27 29 29 34 31 41 34 30 24 28 22 21 15 11 11 17 17 21 25 35 28 28 28 24 23 23 23 28 19 17 10 10 8 8 10 13 17 10 15 13 10 10 10 12 12 14 16 11 10 10 10 10 15 12 10 15 12 12 17 16 14 16 12 12 11 23 23 21 15 15 16 23 15 22 24 31 26 27 19 15 13 10 9 13 19 22 11 11 9 11 11 14 11 12 12 22 22 16 12 21 11 11 11 19 16 23 28 15 13 9 9 8 8 12 11 10 13 11 11 11 17 16 8 6 6 6 8 6 8 8 8 8 8 9 8 8 8 8 8 10 10 10 10 11 11 10 10 10 10 10 11 10 11 11 11 12 13 12 11 14 10 10 6 6 6 6 6 7 9 8 8 13 15 8 8 6 6 6 8 8 11 15 15 10 9 9 9 9 9 10 16 18 7 7 6 6 8 10 15 16 13 10 9 9 11 10 9 10 11 11 11 11 11 16 12 9 9 9 10 8 8 8 8 8 10 14 15 14 12 12 11 10 10 15 13 12 10 10 10 11 12 12 12 15 11 6 8 7 6 8 8 10 10 8 9 8 8 9 9 9 9 10 11 12 11 11 11 9 9 10 10 10 12 11 12 12 12 11 11 11 11 12 11 10 10 10 10 10 10 10 10 9 9 9 10 10 17 15 11 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 9 8 8 6 7 8 8 11 11 14 22 24 14 11 10 10 10 15 16 11 16 19 10 6 6 6 6 8 8 9 10 10 12 12 12 15 10 10 9 9 8 8 9 9 10 21 11 11 8 8 6 6 6 6 10 10 16 15 10 10 10

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no142_g06.b1 MSMg01no142_g06.b1 CHROMAT_FILE:
MSMg01no142_g06.b1 PHD_FILE: MSMg01no142_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:00 2005
         (714 letters)



>mm_chr1_44128109_44129222
          Length = 1114

 Score = 1319 bits (682), Expect = 0.0
 Identities = 706/714 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tactgatgggaacctctctgagccaagcaccataaagcaatgttccaaatagtggaaatg 60
           |||||||||||||||||||||||||||||  | |||||||||||||||||| ||||||||
Sbjct: 914 tactgatgggaacctctctgagccaagcaagagaaagcaatgttccaaataatggaaatg 855

                                                                       
Query: 61  atacaagggaaattagttgtggttttacccacgaagctttattgtggcttttaagtcact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 atacaagggaaattagttgtggttttacccacgaagctttattgtggcttttaagtcact 795

                                                                       
Query: 121 gcatgcctgttttgcctcgttctaaaaagaaaaaagaccagacaaaattcacaaatggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 gcatgcctgttttgcctcgttctaaaaagaaaaaagaccagacaaaattcacaaatggaa 735

                                                                       
Query: 181 gtatagtgaggctgaagtacatgaataaggtgaaaccaccagcttcaaaaccattcaata 240
           ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 734 gtatagtgaggctgaagtatatgaataagatgaaaccaccagcttcaaaaccattcaata 675

                                                                       
Query: 241 tcagaggcaataaaaagaagtcaaaattagacttcaaggctaagtttaaaaagataagcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tcagaggcaataaaaagaagtcaaaattagacttcaaggctaagtttaaaaagataagcc 615

                                                                       
Query: 301 aagctaaagcatttttacctgaatatcaaaacactctttgcgcagccatcgatagcagaa 360
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 aagctaaagcatgtttacctgaatatcaaaacactctttgcgcagccatcgatagcagaa 555

                                                                       
Query: 361 ggcaggggctattccatcatgctccactaaagcaaggagaactagcaagcaaactatgtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ggcaggggctattccatcatgctccactaaagcaaggagaactagcaagcaaactatgtg 495

                                                                       
Query: 421 ttgcttgcactgctgaaagtagtgcattctacaataaagagaagaaacctgaaagaggga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ttgcttgcactgctgaaagtagtgcattctacaataaagagaagaaacctgaaagaggga 435

                                                                       
Query: 481 aacaaaacccctctttacaggtatttcagcctggccaacacctgggggctgatgtggatc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aacaaaacccctctttacaggtatttcagcctggccaacacctgggggctgatgtggatc 375

                                                                       
Query: 541 aaaggaaggaaactctcccagacctatcaccctcctctacaagtcaagaacagcctgtta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aaaggaaggaaactctcccagacctatcaccctcctctacaagtcaagaacagcctgtta 315

                                                                       
Query: 601 acagtcaaaggataaaagtccaagaagatgccctgcaaaatgctttaaaggctaacctcc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 acagtcaaaggataaaagtccaagaagatgccctgcaaaatgctttaaaggctaacctcc 255

                                                                 
Query: 661 aaatggatcccctagacgctccagaattacagaaaactaccaaagcagaaaatg 714
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 254 aaatggatcccctagacactccagaattacagaaaactaccaaagcagaaaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 1114
Length adjustment: 10
Effective length of query: 704
Effective length of database: 1104
Effective search space:   777216
Effective search space used:   777216
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information