BAC Information

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BAC

Clone NameMSMg01-142G24
Chromosome1 (Build37)
Map Location 52,260,079 - 52,260,347
singlet/doubletsinglet
Overlap geneGls
Upstream geneSdpr, LOC383504, Obfc2a, Myo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1
Downstream geneLOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-142G24.T7 (MSMg01no142_g24.b1)MSMg01-142G24.TJ (MSMg01no142_g24.g1)
ACCAG347047AG347048
length1,2251,170
length of high quality
(start - end)
267 (131 - 397)---
definitionCHROMAT_FILE: MSMg01no142_g24.b1 PHD_FILE: MSMg01no142_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:06 2005CHROMAT_FILE: MSMg01no142_g24.g1 PHD_FILE: MSMg01no142_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTATTCATTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATT
CACACAATATACTTGGCCCCTTTAAACACGCCTCATTAAACAGCCAATGT
TAATCAATTCTGAAACATACTATCGCCCCAAAGAGTGAGCGTGCTAATTA
AATATTAGAGATCACAGAAGAAAAAGGCAAAGGTGATAGAAAATGATTTT
ATAAAATAGTTTTGGTTTGATCTTACTACAGAAAATCTTCTGTAACTGAA
CATTACTAAACTCCAAATTAGTATAGATAAGGTAAGACTGTTCTAGATCT
GGGTTTCAGGGCCATGTGGAGACAAGGCCCTGTTAGCTCTGACTGTCCCA
GAACTAATGATATACACACAACTGCTGCAGAGCGCTGGGATAAGGACATG
TTTCACTTTGCCCTGCTAAGAGCTAGTATTTTTACAAATTATTTCTAAAG
ATAACGGAAAATAACAATTAAGTTAGTTGGAGAAAATCTACCTTTCGATA
AACAAACAAACAAACAAACAAAAACCCTCAAATGTGTCTCAAGTAAATAC
AGCACTAAATTCCTGTGCTAATTGTACTAAGCCTAGGGCATCATGCACTA
CTACTATTAAAAGTGACAGACCATCTCAGAACGCAGGCTTTACTAAGATA
CCTGCCAGATTACAGCTAATAGGACAAATGGAGACTAGCATATAGATCAA
TTTATACTTGCCCTGAGTTTATGGAGTAACAATTTAAAATGTTTCATTTT
TAATTTAAAAAATATCACTCCTTTTTTAAACCGAACATATACCCACATAC
CAAACCAAACTTTTTTAAAGTTATAAAACTCAGATACTTATTATAAGAGA
CTTTTTTTATAAAAAGTTATATAGTTTTAATATACTTTCTAAAATTTTTA
CAAATTCCGTTACGTGAAAATTATTTTGGAAAGGTTGGCCCTCTATTTTC
CTAGGCCCCAATGGTATCAATAACTTTAATTTTTTTAGTCTTAAAATTTA
TGGTTAATGTTTTTTAATAACTGGAATACCCCAAAAAACAATGGTGCACA
TATTGGCCTTTTTTTTTCTCTATATACTTAANTCATTTTCCCTCCTTTAA
GTATTATTATTTCCTTTTCCTCCTCAACACCTCTCATATCAATTCCTCTC
TTCTGTTTAATTTCTCTTCTGTAGATATCTCTATTAATTNCTATACTCTG
TATAATCTCTCTTATCTCTTATTTG
CCGATTTTNNNNTTTTCATGCGTAGCGAAGGCGCCAGCTCGCCTACXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAAAGCATATCCTACTTAGA
CTGCGACTCTAATAACCCTTTCCTTAAGTTGCTCCCCTCAGGCATCTTTG
ATCTGCAATCTTCCCATACCGTCAAGATATGCTAGGGAAAGAGTGGAACA
AAGTTTGTGTGAGTAACCAACCAATAACTGACTTGACTTTACGGATACTC
GACAAAATGAATACCATATCCAACGTTGCTCGGATGGACGAAAACTATAA
ACGAGATAATCCAGGGAGAGACCTAAGGAAAAATGTAGCAGTACTGTTCT
GCTACTAGAATGTAGACATACAGTGAGATCTACCTTACTCATAGAGGAGT
GTCTTCCTCAGTTGCCATCACAGGAGTGTCCTCCTGCATCAGATGGGAAC
AAATACTGAAGCCCACGTCCAGACACTATGCAGAGAGTGAGAGAACTTGG
AACACTCATCCCTAAGTGGAATGTCTTGATCAAGTATTTCTCATTTTTTA
AAAATATTTTTAGTTAGGTATTTTCCTCAATTACATTTCCAATGCTGTCG
CAGAAGTCCCAACAACCTCACCCACAATCTCCTATTCATGCATTCCCACT
TTTTGGCCCTGGCGTTCCCATGTACTGCGGCATATACAGTTTGCATGTCC
AATAGGCCTCTCTTTCCAGAGATGGACGACTAGGACATCGTTTGATACGT
ATGCCGCTAGAGTCAAGAGTTCCATGGATCTGGCTAGTTCAAAATGTAGT
TCCATCTATAGGATTGCAGATGCGTTTAGCTCCTTTGGATAAGTTGTCTA
GCTCCTCCGTTGTGGGCCTTGTTGTCCATCCAATACCTGACTGTGAACAT
CCACTTCTGGGTTTGCTAGGCCCCGGCATAGTCTCTTCAGAAAGGGTTAT
ATTAGGGGACTTTCCGCCAAATTTTTGCTAGAGAATGGCTTGGGGGTCCA
CCGTTTGGATGGCTCAATTATGGGGAAGGAAACCCTGGGATAATTTGGAA
TTTTTTAAAACGAGTCCCACCCTTTTGTTGTCCCCCTTTAAAAAATTTTG
TCCTTTTTTATTACCCTCCCCAAAAAGTTTTTGTTTTTCCCCGATTTTTA
TTAAAGGTTGGTACATAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no142_g24.b1 MSMg01no142_g24.b1 CHROMAT_FILE:
MSMg01no142_g24.b1 PHD_FILE: MSMg01no142_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:06 2005
         (267 letters)



>mm_chr1_52259879_52260547
          Length = 669

 Score =  485 bits (251), Expect = e-142
 Identities = 264/269 (98%), Gaps = 2/269 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagagtgagcgtgctaattaaatattagagatcacagaagaaaaaggcaaaggtgataga 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagagtgagtgtgctaattaaatattagagatcacagaagaaaaaggcaaaggtgataga 260

                                                                       
Query: 61  aaatgattttataaaatagttttggtttgatcttactacagaaaatcttctgtaactgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 aaatgattttataaaatagttttggtttgatcttactacagaaaatcttctgtaactcaa 320

                                                                       
Query: 121 cattactaaactccaaattagtatagataa--ggtaagactgttctagatctgggtttca 178
           ||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||
Sbjct: 321 cattactaaactccaaattagtataaataaaaggtaagactgttctagatctgggtttca 380

                                                                       
Query: 179 gggccatgtggagacaaggccctgttagctctgactgtcccagaactaatgatatacaca 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggccatgtggagacaaggccctgttagctctgactgtcccagaactaatgatatacaca 440

                                        
Query: 239 caactgctgcagagcgctgggataaggac 267
           |||||||||||||||||||||||||||||
Sbjct: 441 caactgctgcagagcgctgggataaggac 469


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 669
Length adjustment: 9
Effective length of query: 258
Effective length of database: 660
Effective search space:   170280
Effective search space used:   170280
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)