BAC Information

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BAC

Clone NameMSMg01-142L05
Chromosome1 (Build37)
Map Location 96,324,949 - 96,325,358
singlet/doubletsinglet
Overlap genenone
Upstream geneHdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012
Downstream geneLOC666025, LOC100040685, LOC383603, Tmem157
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-142L05.T7 (MSMg01no142_l05.b1)MSMg01-142L05.TJ (MSMg01no142_l05.g1)
ACCAG347245AG347246
length1,3141,247
length of high quality
(start - end)
424 (133 - 556)684 (85 - 768)
definitionCHROMAT_FILE: MSMg01no142_l05.b1 PHD_FILE: MSMg01no142_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:42 2005CHROMAT_FILE: MSMg01no142_l05.g1 PHD_FILE: MSMg01no142_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGTTCTTTNNNNNGCATGTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACTTTGTAGACCAGGCCCTTTACAAACTCAGAAATCTGC
TTGCCTCTGCCTCCCAACCCTTGAAATTACCGGCGTGCGCCACCACCCGG
CCTGCCAGTTTTGTTACTATAGCTTTGTAGTATAATTTGAATTCAGGGAT
GGTGATGCCTCCAACAGTCTTTTTATTATCCTTGAGTGTTTTAGGAATCC
TGCTTTGTCTTGTTTTGTTTAGAGTGTGTGTGTGTGTGTGTCTGAGTGTG
TTTATTTTCATATGATGCTGAATATTTGTCCTTTCAAGTCTGTGGAGAAT
TGTCAGACTTATTATGGGGATTTTGTTGAGTTCTCTAGATTGATTTTGGT
AGGATGTTTATGTTCACTATACTAATTCCACTGACTCATAAGGATGAGAA
ATCTTTCCATCTGGTACCTTCTTCAGTCTCTCTCTCTTCAGTGTCTTAAG
GATTTTATCCTACAAGTCTTTCCTTTCCTTGGTTAGAATTACCTGAAGGA
TTGTGAAGGTGTTGTTTCTCCGAATTCTTCCATAGTCTTTTTGTCATTTG
TAAATAGGAAGGATACTGATTCTTGTGAGTTAATTTTGTTTCTTGCTACC
ATTGTTTAAACTATCCCTTGTAACAGTTTTTCTTCTCTGCAGTCTTTTTT
CTTTTAATTATTTTCCATTTTATTTTCTTGTCTTTAATCATTTTTTTGTT
CTCTTCCTTTTCCTTTTTTTATCTCCCTTTGATCTTCTTTTCCTTTTTTT
TATTCTCCTTCTTAAAATTTTCTGTCCTTTACTCTCCATCAGTTTATGGT
CTCTCCCTAAACATCTTTTTCTTCCCCTCCTTGTCCTTCCTTTCCTACTC
TCTCCTAATTTCCTTCCTCTCATTGTTTCTCTTTCTTTCTTATCTACTTT
TTTTTCTTCTTCCTCTCTTTTTTTTTTATTTATTTCCCTCTTCTTTCTCT
TTCACTCTCATTTCCTCTTTTTTTCCCTTTACTCTCTTCTTTTTTTTTCT
TTTTCCTTCTTTTTTCTTCTATCTTATTCCTTCTTATATTTTTTTTTTTC
TTTCCTATTTCTCTTCTATTTTCTCTCTTTCTACTTACTTTATTTGCTTT
TTTCTTCTTCTTCTCTTCCCTTTCTCTATTCTTTTCTCTTCTTTCTTTCT
CACTCTCTATCTTCCATTCTCTCTTCTCTATTCTATTATCTGCTTATTTT
TTCTTTTTCCTTCTTTCCTATTCTCTTCTATCTTCTTCTATCAATGTCTC
CNCTCTATTCTCTC
CATTCTTCTTNNTAAACATGGAGNCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTTTAATCCCCACTCTTCTCTATGC
TTCCACTCCCTCTTCTGATAAAACCTTTCCATGCCTGGCATTCCTCCCCC
TCTATGTTCATGTACCCTGTCTACTCTGCCCATTCCCTCAAAGCATTTTC
TTCCTGCTCTCCTTCCTACTAAGGGTCCCTTTCTTTTAGTATCTGATATT
AAACAAATCAGTGTAAAACTTTAATTAAGGCATACCTATTAATGACATGG
ACACTAATCTATGGAGGCATGGGTTGTTTCACTCAGTGTAATATTTTTCA
GGTCTATTCATTGTTCTACAAACGTCATAATTTAATTCTTTTTAACCAGT
GAATATTATTACATCTTGCACACATACCATACTTTCAGTATCCATTCTTC
CTCTGACGGGTGTCAAAGCTCATTCAATTTTCTCATATTATGAATATAGG
CAAAATGAACATGGAAACATCTCTGTAACAGGGTATGAATGGAGTCTTTT
GGGCAAATAATCAAGAATGATATATATGAGTCATGCCAAAGCTCTATTTT
TAGCTTTTGGGCAAACTCCATGCTTATTTTTATTGTACCAGTTTACACCC
ATATCAATAGTGAATAACAGTTCCTCTTTCTCCACAGCTTCTCCTGCATT
TTCAGCCTCTTGTTTTCTTGATGCCAGTTATTAAGAATAAAATAAGATGA
AATCTCTAGGTTGCTTTAATTTGTTGTCCCCCAGTGACTAAAATTATCGA
ACATTTTTAGAATGTGTATTAATATATCAGACAGGGTTCTCTAGAAAAAC
AGAACCGATTCTAACACATGTATATGAGATTATTAGAATGGCCTACAGCC
AGTGATCCAATTTGTTCCAAAACAGCTGACTCCCAATTGGAAAGTCCAAA
AAATTCAATAATTGTTTGGAAAAAGGAATCTGGTTGCCTCAAACAGCCTT
TGGTTGTTTCCAAAAATCCTGAAAAAATTAAAACTCTATTAACTAGGTAA
GGAAATAACCTTTCCCATGAAAACTAAAGCCAAATTATACCAAAATATAA
AAATTTCTCTTCTCCACAGGTCCTTTTAAATAAACGGCCCCCAATAAAGA
TGTGGGCCCCAAATTTAAACTTCTCAATGTACTTAAAACTTTATTGGGTA
TTCTTCCCTAACCCTCTCTTAATATAGGTTTATTTTCTATCTTCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no142_l05.g1 MSMg01no142_l05.g1 CHROMAT_FILE:
MSMg01no142_l05.g1 PHD_FILE: MSMg01no142_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:43 2005
         (684 letters)



>mm_chr1_96324949_96326032
          Length = 1084

 Score =  754 bits (390), Expect = 0.0
 Identities = 405/410 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccactcttctctatgcttccactccctcttctgataaaacctttccatgcctggcattcc 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 410 ccactcttctctatgcttccactccctcttctgattaaacctttccatgcctggcattcc 351

                                                                       
Query: 61  tccccctctatgttcatgtaccctgtctactctgcccattccctcaaagcattttcttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tccccctctatgttcatgtaccctgtctactctgcccattccctcaaagcattttcttcc 291

                                                                       
Query: 121 tgctctccttcctactaagggtccctttcttttagtatctgatattaaacaaatcagtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tgctctccttcctactaagggtccctttcttttagtatctgatattaaacaaatcagtgt 231

                                                                       
Query: 181 aaaactttaattaaggcatacctattaatgacatggacactaatctatggaggcatgggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 aaaactttaattaaggcatacctattaatgacatggacactaatctatggaggcatgggt 171

                                                                       
Query: 241 tgtttcactcagtgtaatatttttcaggtctattcattgttctacaaacgtcataattta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 170 tgtttcactcagtgtaatatttttcaggtctattcattgttctacaaacgtcatagttta 111

                                                                       
Query: 301 attctttttaaccagtgaatattattacatcttgcacacataccatactttcagtatcca 360
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 110 attctttttaaccagtgaataaaattacatcttgcacacataccatactttcagtatcca 51

                                                             
Query: 361 ttcttcctctgacgggtgtcaaagctcattcaattttctcatattatgaa 410
           |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 50  ttcttcctctaacgggtgtcaaagctcattcaattttctcatattatgaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)