BAC Information

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BAC

Clone NameMSMg01-143B21
Chromosome1 (Build37)
Map Location 17,134,009 - 17,134,322
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665282, Stau2, Ube2w, Tceb1, LOC665480, Tmem70, Ly96, LOC100040056, LOC665496, EG545306, Jph1
Downstream geneGdap1, LOC383495, Rbm6-ps1, Ppia-ps1_125.1, Pi15, Crispld1, LOC665564, LOC100040126, Crisp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143B21.T7 (MSMg01no143_b21.b1)MSMg01-143B21.TJ (MSMg01no143_b21.g1)
ACCAG347551AG347552
length702714
length of high quality
(start - end)
249 (46 - 294)337 (75 - 411)
definitionCHROMAT_FILE: MSMg01no143_b21.b1 PHD_FILE: MSMg01no143_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:35 2005CHROMAT_FILE: MSMg01no143_b21.g1 PHD_FILE: MSMg01no143_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGCTCCTATTTCAAGAGAATGCGCGGAATTCCTAAACCTGCCAACAGCTT
CATTGAAGTAGCTGGATATAAAGTTAACTCAAAGAAGTCAATGGCCTTTC
TCTACACAAAGAATAAACAGGTTGAGAAAGAAATGAGGGAAACAACACCC
TTCATAATAGTCACAAATAATATGAAATACGTTGGCGTGACTCTAAGTAA
GGAAGTAAAAGATCTGTATGATAAGAACTTCTAGTCTCTGAAGAAAGAAA
TTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCTTGTATTGTT
TTGAACAATATAGTAAAAATGGCTATCTTGCCAAAAGCTATCTACCGATT
CTATGCAATCCCCATCATAATTCCAACTCAATTCTTCTTTTACACCACCA
AGGTCTATCTGCTTATTCTTCTGTAATATTACATAACCTATGATAGTTTA
TACTCTTCTCTTGAATAAATGATTCTTTGTTGTATTCTCCATCCCTGACC
TTAATCTTTTCTACTTATCTTTTGTGATAATTTCTGTTTGCTTACGTGTA
TTTTTTCTTACTTGTTTACCCAAGTCATTTTACTTGACTAACTTTTTATG
TTCCCTTTATTTTTATTTTTGTTTTATCTTCATATAGGTTTTTATATATT
ATCGCACGGTCATCCCCAAATTATATTCACTTATCTTTCTTATATTATAT
CG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGGTGTGATCGACATTTTTTATCTGG
GGTCCATCTGAGGGAGGTCCATGCAGGAGAGCACATGGACCACAGAAGCA
ACAGACCTTCTTGGACAAGGTACCTTCGGGCCTTCATCCAGCAAGTCTTG
GATAGCCCTACACACCAAAAACAGCAAGATTCGGATGTAAAATCATATCT
CATGATTCTGGTAGAGGATTTTAAGAAGGACATTAATAACTCACTTAAAG
AAATACCATGGGCATACCATTGCATACACTAGCAAGATTTTATCGAAAGG
ACCCAGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACAC
AGAAGTGGATGCTCACACCCAGCTATTGGATGGATCACAGGGCTCCCAAT
GGAGGAGCTAGAGAAAGCACCCTAGGAGCTAAAGGAATCTGCAACCCTAT
AGGTGGAACAACATTATGAATTATTCAGTACTCCCGATTTCTTGACTCTA
TCTGCCTATGTCTCTCATGTAGTTCTATTCGTTCAACTCTGTAATAAGAT
TCCCATCGGATTCATCGACTTTATCAGACCCTTGTCCGCTTTTATTTCGA
TTCTTTTATATCAAGTTTATATTTTTTAAATTTTTATATAAATAAGAGTA
AAATAATTGAATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_b21.g1 MSMg01no143_b21.g1 CHROMAT_FILE:
MSMg01no143_b21.g1 PHD_FILE: MSMg01no143_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:35 2005
         (337 letters)



>mm_chr1_17134009_17134745
          Length = 737

 Score =  578 bits (299), Expect = e-169
 Identities = 311/315 (98%), Gaps = 2/315 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtgtgatcgacattttttatctggggtccatctgagggaggtccatgcaggagagcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 aggtgtgatcgacattttttatctggggtccatctgagggaggtccatgcaggagagcac 255

                                                                       
Query: 61  a-tggaccacagaagcaacagaccttcttggacaaggtaccttcgggccttcatccagca 119
           |  || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 254 acagg-ccacagaagcaacagaccttcttggacaaggtaccttcgtgccttcatccagca 196

                                                                       
Query: 120 agtcttggatagccctacacaccaaaaacagcaagattcggatgtaaaatcatatctcat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 agtcttggatagccctacacaccaaaaacagcaagattcggatgtaaaatcatatctcat 136

                                                                       
Query: 180 gattctggtagaggattttaagaaggacattaataactcacttaaagaaataccatgggc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 gattctggtagaggattttaagaaggacattaataactcacttaaagaaataccatgggc 76

                                                                       
Query: 240 ataccattgcatacactagcaagattttatcgaaaggacccagatgtagctgtctcttgt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  ataccattgcatacactagcaagattttatcgaaaggacccagatgtagctgtctcttgt 16

                          
Query: 300 gagactatgccgggg 314
           |||||||||||||||
Sbjct: 15  gagactatgccgggg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)