Query= MSMg01no143_f03.b1 MSMg01no143_f03.b1 CHROMAT_FILE:
MSMg01no143_f03.b1 PHD_FILE: MSMg01no143_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:51 2005
(264 letters)
>mm_chr1_32526417_32527080
Length = 664
Score = 497 bits (257), Expect = e-145
Identities = 262/264 (99%)
Strand = Plus / Plus
Query: 1 cacatttcttctgtattctttgagactgtagctccttaaaataattcatatctctttttg 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 cacatttcttctgtattctttgagactgtagctccttaaaataattcatgtctctttttg 260
Query: 61 tgaaatcttgaaagcatataattgtaatagatttggtcctgttaatgccataccgaattg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaaatcttgaaagcatataattgtaatagatttggtcctgttaatgccataccgaattg 320
Query: 121 ggtgcttaatgggaccttaggggagacacgtttcttttggctcagatcatttgccaaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtgcttaatgggaccttaggggagacacgtttcttttggctcagatcatttgccaaatt 380
Query: 181 tgaataggctgnaactttggtaaatatttattctaaagttcttaattgaataaataatgc 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaataggctgtaactttggtaaatatttattctaaagttcttaattgaataaataatgc 440
Query: 241 agccctatcatcattaatagcaga 264
||||||||||||||||||||||||
Sbjct: 441 agccctatcatcattaatagcaga 464
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space: 167025
Effective search space used: 167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no143_f03.g1 MSMg01no143_f03.g1 CHROMAT_FILE:
MSMg01no143_f03.g1 PHD_FILE: MSMg01no143_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:51 2005
(572 letters)
>mm_chr1_32599019_32599992
Length = 974
Score = 934 bits (483), Expect = 0.0
Identities = 520/543 (95%), Gaps = 18/543 (3%)
Strand = Plus / Minus
Query: 1 aaagagctcctggaggctggaagcactacctgctggggaaccaaagcagtgtaggtaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 aaagagctcctggaggctggaagcactacctgctggggaaccaaagcagtgtaggtaaac 484
Query: 61 ttgccaccaagaaacatcatgctctgagaaacatcagcatcatgagtgtaaatacaacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ttgccaccaagaaacatcatgctctgagaaacatcagcatcatgagtgtaaatacaacat 424
Query: 121 ctcaaagacaggttggtttattgtgagaaaatggatctattaaaatgcaaaatgtcaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ctcaaagacaggttggtttattgtgagaaaatggatctattaaaatgcaaaatgtcaatt 364
Query: 181 atgcaataaaacaacattaaatcatcatttccatttcaggtgacatttaggtctcttcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 atgcaataaaacaacattaaatcatcatttccatttcaggtgacatttaggtctcttcca 304
Query: 241 catatttttgtttgtttgtttgctaatgttttttgtgtgcaaagtattactttcaaatgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 catatttttgtttgtttgtttgctaatgttttttgtgtgcaaagtattactttcaaatgc 244
Query: 301 acaagttcatctttgtgtgtgtgtgag--agagacagcaaggacacacagagagagagag 358
||||||||||||||||||||||||| | |||||||||||||| | | ||||||||||||
Sbjct: 243 acaagttcatctttgtgtgtgtgtgtgtgagagacagcaaggagagagagagagagagag 184
Query: 359 ag----------------agagagatcagtctatagttcctggaaattagttagcagatt 402
|| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 agggggggggagagagagagagagatcagtctatagttcctggaaattagttagcagatt 124
Query: 403 tccatttttggtgcttctattggcaacatatagctcactcccagaatgaaggacggtggt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 tccatttttggtgcttctattggcaacatatagctcactcccagaatgaaggacggtggt 64
Query: 463 ggcagtagtttgctgagacattaactagggacatctagttataaaatctactgcagatga 522
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 63 ggcagtagtttgctgagacattaactaggcacatctagttataaaatctactgcagatga 4
Query: 523 tat 525
|||
Sbjct: 3 tat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 974
Length adjustment: 10
Effective length of query: 562
Effective length of database: 964
Effective search space: 541768
Effective search space used: 541768
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
