CAAAATTTGCGCCGCTAACAACTCCTATCCCAAGAGATCCGCGNAATTCA
CAATCCCCCACCACCTAANNGNGCTCTGTGNTAGTAGCCATCCTGNCTCC
TGAACCCACGAAGGCTCATCACAGCTTTGGTGGGCCAGGCCCTACACTAA
CCACAGGCGTTCAGGATGCCTCAAACCACCCCTTTTTTTTTTTTTAAAAA
CCCTTCCCGCCTAATTGGCCTCTGAAAAAAAAGGAAATTAAATTCTCCCA
CGAAACCCAAAATTCCAAAAAAAACACGGCCCCACCCCCCTCCCCCAAAA
AAAACCGNTTTTTTNNNNNNNNNNNNNNNNNNTNATNNNAGTATTTTTTT
GTCTCTTNNNNNNNNTTTTTNTNTCCCCCCCCNNNNNNNNNCNACTCAAT
AATATAAAGAGGCGCTGGGGNNNNNNNNANNNNNNNAAAAAATATATTTA
TTTATTGGGGGGGCTTNNNNNNNNNANAANCNCNNANNNNANNNNCNNNN
CAANNNANNNAAAANNACCAACCCCANACCCCATAATCTTTATTAATATT
TTCTATTTGGGGGGGTGGGGGGCG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTCTTGCTCCCATCATTCCTTCTCTTCAA
AATCTAGGCTATTTACAGGCACACTTAATGCAATGACAAACCTTTGCTCT
CAGCCCATCAGTTTATAGAGTGCCTCTGTGAAGTGGTGGTCCATAGTCCT
GCTACACTAAATACTAGTGGAACTTTACTGTGCTCCATAGAGCCCTTCAT
TGGAGCAGACAAATACATAGATCTGATTGACAAAGCTTCATCAAATAAAT
GCAGAGCCAATAGTTTCCCCTATTGACATAAGAATGTAGAAAATGGTATA
GCTAATTTCAAAGAAATCAAAAACTTTCTATATTTTGAATTGTTTTTCAT
TTCACCCAAAGGCCTGCTTCCAAGGATATATGATATAGGAAAAATTTAAT
TTATTTATACTTGTCATATTACCCACACCATGAACTTTAGACTTGGAAAA
TTTAAGAAGTTATGTGAACTAAATGTATGGTTGAAAGAACTCTAGAACTC
AAAGGTCCAGCAGATTTTGTGGCAAGATATGGTGCCAAAAATTAAGTCAT
GGTTCTAGACACATTATAGTAGTTTACTCAATATTCAAATTGAAATCCTT
ATTGTTTTAAAAATTACTGTGGCTCTGGGGCATCCCCAGCTGCCCTTCAC
AGTCTGC

Query= MSMg01no143_f19.g1 MSMg01no143_f19.g1 CHROMAT_FILE:
MSMg01no143_f19.g1 PHD_FILE: MSMg01no143_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:54 2005
         (633 letters)



>mm_chr1_100125872_100126906
          Length = 1035

 Score = 1079 bits (558), Expect = 0.0
 Identities = 606/622 (97%), Gaps = 2/622 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcttgctccc-atcattccttctcttcaaaatctaggctatttacaggcacacttaatg 59
           ||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 822 ttcttgctcccaatcattccttctcttcaaaatataggctatctacaggcacacttaatg 763

                                                                       
Query: 60  caatgacaaacctttgctctcagcccatcagtttatagagtgcctctgtgaagtggtggt 119
           | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 762 ccatgacaaacctttgctctcagcccatcagttcatagagtgcctctgtgaagtggtggt 703

                                                                       
Query: 120 ccatagtcctgctacactaaatactagtggaactttactgtgctccatagagcccttcat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 ccatagtcctgctacactaaatactagtggaactttactgtgctccatagagcccttcat 643

                                                                       
Query: 180 tggagcagacaaatacatagatctgattgacaaagcttcatcaaataaatgcagagccaa 239
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 642 tggagcagacaaatacatagatctgactgacaaagcttcatcaaataaatgcagagccaa 583

                                                                       
Query: 240 tagtttcccctattgacataagaatgtagaaaatggtatagctaatttcaaagaaatcaa 299
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 582 tagtttcccctattgacataagaatgtagaaaatgatatagctaatttcaaagaaatcaa 523

                                                                       
Query: 300 aaactttctatattttgaattgtttttcatttcacccaaaggcctgcttccaaggatata 359
            ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 522 gaactttctatattttgaattgtttttcatttcacccaaaggtctgcttccaaggatata 463

                                                                       
Query: 360 tgatataggaaaaatttaatttatttatacttgtcatattacccacaccatgaactttag 419
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 462 tgatataggaaaaattaaatttatttatacttgtcatattacccacaccatgaattttag 403

                                                                       
Query: 420 acttggaaaatttaagaagttatgtgaactaaatgtatggttgaaagaactctagaactc 479
            ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 402 tcttggaaaatttaagaagttatgtgaactaaatgtatggttgaaagagctctagaactc 343

                                                                       
Query: 480 aaaggtccagcagattttgtggcaagatatggtgcc-aaaaattaagtcatggttctaga 538
           ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 342 aaaagtccagcagattttgtggcaagatatggtgccaaaaaattaagtcatggttctaga 283

                                                                       
Query: 539 cacattatagtagtttactcaatattcaaattgaaatccttattgttttaaaaattactg 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 cacattatagtagtttactcaatattcaaattgaaatccttattgttttaaaaattactg 223

                                 
Query: 599 tggctctggggcatccccagct 620
           ||||||||||||||| ||||||
Sbjct: 222 tggctctggggcatctccagct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1035
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1025
Effective search space:   638575
Effective search space used:   638575
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)