BAC Information

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BAC

Clone NameMSMg01-143G22
Chromosome1 (Build37)
Map Location 98,808,339 - 98,808,453
singlet/doubletsinglet
Overlap geneSlco6b1
Upstream geneGm1833, Slco4c1, EG329217
Downstream geneLOC670708, LOC623430, Slco6c1, EG634331, EG634346, D1Ertd622e, Hisppd1, Zh2c2, Pam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143G22.T7 (MSMg01no143_g22.b1)MSMg01-143G22.TJ (MSMg01no143_g22.g1)
ACCAG347779AG347780
length909688
length of high quality
(start - end)
---264 (374 - 637)
definitionCHROMAT_FILE: MSMg01no143_g22.b1 PHD_FILE: MSMg01no143_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:59 2005CHROMAT_FILE: MSMg01no143_g22.g1 PHD_FILE: MSMg01no143_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCCCAANNCCCNCNCTNCTCCCTCTTTTCTAAATTATTCTCACCGCG
CCTCTTATCACCCTCTCTCTTGTTTTTCCCCATAGGATAGGAATATTAAT
AGAATATTACTTAAACTCTTATTTTCTACACCATACTGACACGAACCTCA
CACACCAAAAAAATAAAATGTATTGTTTATTGAGGTTCCATTTCGTTAAA
TTGATGCACGGGCCGTTCTGCCCCCCTGGCGTCGTATTTCTGGGCGCCAA
GCGAAGGGAGAGTAAATATAAAGGAAAGAGAGAGAAAGACAATTTTGGGG
TTTNNNNNNNNCCNNNNNNNNNNNNNNNNNTTAAGAGAGNAGAGGGNGGG
AGGAGAAGGGGGTAGGAGTGACCAAGGTGNNAAGAGGGGGGAGCGTGAGG
GGCGCAGAGTTGGAAGGCGTGNACGAGAAGGAGAGGGAGAGGNTGGAGAG
GGTGGAGGCNAGAGGGNAGGNNCNAGCAGGAGAGAGGGAGAGGNTAGAGG
CAGNTGAAGAGGAGAGACAGCTTAGNAGAAGGNAGCGNAGCGAGNCGTAG
GTGTGGGCTGGNGGAGAGNAGGGGAAGCTTTCGTAAATAAAAAATTTGCN
CGGGGNCCCGGNCTTTAAATAACGGAACNNTCACNTAANTNAGCGTCGCG
AGAAGAGAATTGGCGNNCGGGNNAAAATTTCCCGGGTGGGGTTAAGGGTG
CTACTGCCNGTAATGGGGNCTTTTTCAATTCCCCAAAAAAACTTTCCNTA
AAACTTGGAGAAGAGGGGGAAAAAAAAATTCCCCTCTAAAGATTTCCCAG
TAAAAAATTCTGTTAAAGAAAAGCAGGTTGTCCGGCCTTATGTTACACAA
AGGTGATGTTTAAAATTTGGGAAGAAAAAGAGGGAACAAAACCCCCGCGT
TGGTGTGTT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTGCCCAGATCACATAAAACATTTCTCTTTGGAGGCTGATTAA
TATGAAAAGTTTTGTAAGCCTTGAAAATATTAATTTTATACTACTCTATA
ATAATTTCATTTTGTAATTGGGAAATTAATACTTTGAGAAATAAACTATC
TTTTCTTCAGGTACATGGCATTCTTTTCAAAAAACTTTGGTTAAATCTTG
ACTTACATTATTCCTTTTTTAACACAGGTATTTTTTGCAAATTGGCCACA
ACCTTCTTTACTCTCNGTGCATTTTTTAAATATAATGTTTCCAGAGTTGG
AAGCACGAATGCAAAGAACACAAGCAAAAAATAAAAAATAAAAGAGGCAA
AAAATAAAAAATAATTACTAACTGATTTCTTCCTTGGTAAGAATTTTAAT
TTTCCCTTTGTCAATGGAATACTGTATCAATAACTTTCTTTTTTTTTTCT
TTCCATTTTTTATTAGGTATTTAACTCATTTACATTTCCAATGCTATACC
AAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCCACTCCCA
CTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGTTTGTTTTT
TTAATGGGCCTCTCTTTCCAGTGATGGTCGACTAGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_g22.g1 MSMg01no143_g22.g1 CHROMAT_FILE:
MSMg01no143_g22.g1 PHD_FILE: MSMg01no143_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:59 2005
         (264 letters)



>mm_chr1_98808139_98808802
          Length = 664

 Score =  215 bits (111), Expect = 3e-60
 Identities = 114/115 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcaaaaaataaaaaataaaagaggcaaaaaataaaaaataattactaactgatttcttcc 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 315 gcaaaaaataaaaaataaaagaggcaaaaaataaaaaataattattaactgatttcttcc 256

                                                                  
Query: 61  ttggtaagaattttaattttccctttgtcaatggaatactgtatcaataactttc 115
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ttggtaagaattttaattttccctttgtcaatggaatactgtatcaataactttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space:   167025
Effective search space used:   167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)