BAC Information

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BAC

Clone NameMSMg01-143K01
Chromosome1 (Build37)
Map Location 87,483,138 - 87,483,358
singlet/doubletsinglet
Overlap geneSp110
Upstream geneLOC100040213, LOC100039794, EG665338
Downstream geneSp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143K01.T7 (MSMg01no143_k01.b1)MSMg01-143K01.TJ (MSMg01no143_k01.g1)
ACCAG347924AG347925
length690679
length of high quality
(start - end)
92 (64 - 155)221 (85 - 305)
definitionCHROMAT_FILE: MSMg01no143_k01.b1 PHD_FILE: MSMg01no143_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:14 2005CHROMAT_FILE: MSMg01no143_k01.g1 PHD_FILE: MSMg01no143_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:14 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCACAAAACTCCCCTCTGCTCTCCATAATACTCATCCTCTGACCTACA
TACGCACCCTTTGGCCCATGAGTCCTTTCGTAACAGTGCGGGTTGCCTAT
GCATAGTTTTGTCTGCATATGGGTGTTTTGTTTTGCTTGCATGTATAGCT
GTGTACCACGATCATGCCTGGTGCTCCCGGAGGCTAGAAGTCATTGGATC
TCCTTGAGGTGGAGTTAAAAGATCATTTTGAGCCACCATGTGTATGCTGG
CAAACAAAACCTGGGTCCTCTGGAAGAGCAGTCAGTGCTCCTTAACCTTT
GAGCCGTCTGTTAAGAGCCTGGATTTCTAGAAACAATCCTGACTCATAAG
CTGGAGATTTTCCCCCCACCCTGAGCCATATTCTCGAACTCATATTCTCA
TCTGCGGTGATACTGTCCTCCTTGTTCTCATATTACATTTTTATAGGAGG
GCTAAAAGATGAACAATTTCTTACACATTTTCTATTCCATGCTTGTCTAT
ATCTCCCTAGTCTTTATTTTATCCCGCATATTTTTTTGATCAAGATTATT
CTCCACCTTATCTCTCTCCCACCTCACCGTAATATCCGCCCCCATTACTT
TCCGCCCCGTTTTTTACCTCGTGTTTCCTCTTCTCTAATG
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTGATCAGTTCTTGGGAAATTAAGCTAGGG
AACAGACAATGGTAGAGCCTAAGGATGACTTCTGGGCATGAGAACCCAAG
AATTTGTGAAGGGAAAACAAGAACCAGACATGAGGAGATAAAGACTTGAG
CAGCTGGAGTATTGGATCGTTTGCCTGCTATCCCAGCACTTGAAAGCATC
CAGGATCATGGAAAGAACTGAGGTGGGAGAAAACGGACTTGGAAGGCTTC
CAGGAAGCAATGGTTAAACCAATGGATGACAGTATCAGATAAGGTCACAG
TGTTTTTATCATTATTATCATTATCATAATTATGATATTTATCAGTATGT
GCAGGTTGCCCACCCCCCCCATGGTACTCATGGCGAGGCCAAGAACCAAC
TTGTGAGTTGGATCTGTTCTACCACCACATGGCTTGCTTGTATCCAATTC
ACGTCACCACGCTTGGTGCCTAGGACCTCGAGGAATTGACGCCATCTGAC
AAACCATTGTTCAATTCTCCCTGACTGTTTACCTCTCAGATCTAAAACAC
GTACACCATCTTCTACAATAACCCTTAACCTTTTCGTAGCCACCTCTCTT
CCACTTAACCCCTCCCCCCCCCCCTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_k01.g1 MSMg01no143_k01.g1 CHROMAT_FILE:
MSMg01no143_k01.g1 PHD_FILE: MSMg01no143_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:14 2005
         (221 letters)



>mm_chr1_87482938_87483558
          Length = 621

 Score =  397 bits (205), Expect = e-115
 Identities = 217/221 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaaattaagctagggaacagacaatggtagagcctaaggatgacttctgggcatgagaa 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaaattaagctagggaacagataatggtagagcctaaggatgacttctgggcatgagaa 260

                                                                       
Query: 61  cccaagaatttgtgaagggaaaacaagaaccagacatgaggagataaagacttgagcagc 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accaagaatttgtgaagggaaaacaagaaccagacatgaggagataaagacttgagcagc 320

                                                                       
Query: 121 tggagtattggatcgtttgcctgctatcccagcacttgaaagcatccaggatcatggaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 tggagtattggatcgtttgcctgctatcccagcacttgaaagcatccaggaccatggaaa 380

                                                    
Query: 181 gaactgaggtgggagaaaacggacttggaaggcttccagga 221
           |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaccgaggtgggagaaaacggacttggaaggcttccagga 421


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 621
Length adjustment: 9
Effective length of query: 212
Effective length of database: 612
Effective search space:   129744
Effective search space used:   129744
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)