Query= MSMg01no143_l18.b1 MSMg01no143_l18.b1 CHROMAT_FILE:
MSMg01no143_l18.b1 PHD_FILE: MSMg01no143_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:22 2005
(323 letters)
>mm_chr1_149025410_149026132
Length = 723
Score = 578 bits (299), Expect = e-169
Identities = 317/323 (98%)
Strand = Plus / Plus
Query: 1 ttaaagatattgttattccacacagatttatcaaaatgaaaatcactgaataaacctagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaaagatattgttattccacacagatttatcaaaatgaaaatcactgaataaacctagt 260
Query: 61 catagtcaccaaaaatgctattgataaatgcccttattcaaaaaatcttatgctaatatt 120
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 catagtcaccagaaatgctattgataaatgtttttattcaaaaaatcttatgctaatatt 320
Query: 121 tgaatagaaatttcaataagaccatttagttatcacaaaaacaaatgtatgggtatgctg 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagtagaaatttcaataagaccatttagttatcacaaaaacaaatgtatgggtatgctg 380
Query: 181 gattataaactaaattatccctaaaacagctggttattgcaattacatatcagcaagata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gattataaactaaattatccctaaaacagctggttattgcaattacatatcagcaagata 440
Query: 241 ttgttcagattatattaacattactcatttgaatattactatatggtattcattattaat 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgttcagaatatattaacattactcatttgaatattactatatggtattcattattaat 500
Query: 301 tttaaattaaatttcagtagatt 323
|||||||||||||||||||||||
Sbjct: 501 tttaaattaaatttcagtagatt 523
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space: 224196
Effective search space used: 224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_l18.g1 MSMg01no143_l18.g1 CHROMAT_FILE:
MSMg01no143_l18.g1 PHD_FILE: MSMg01no143_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:22 2005
(492 letters)
>mm_chr1_149092887_149093779
Length = 893
Score = 930 bits (481), Expect = 0.0
Identities = 490/493 (99%), Gaps = 1/493 (0%)
Strand = Plus / Minus
Query: 1 ccatagagac-aatagtcttgggggcatccggttaacccactcaatctggactgagtgga 59
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 ccatagagacaaatagtcttgggggcatccggttaacccactcaatctggactgagtgga 634
Query: 60 gcttccctggagatgttccaggaagcaaagaatcagaaataagaaaggctttaattttta 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gcttccctggagatgttccaggaagcaaagaatcagaaataagaaaggctttaattttta 574
Query: 120 tgctcaaacccagaaaaggccagcattgacttcttgccatattttgaggtataattagcc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tgctcaaacccagaaaaggccagcattgacttcttgccatattttgaggtataattagcc 514
Query: 180 tgaaaaaagtcacattcttaacattatgtgcatatcacaagtttaataagagcaccttac 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 513 tgaaaaaagtcacattcttaacattatgtgcatatcacaagtttaataagagcatcttac 454
Query: 240 acttagggatactgttgtctcattctcacctaaaatgctataccttgctctttgccttct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 acttagggatactgttgtctcattctcacctaaaatgctataccttgctctttgccttct 394
Query: 300 taatgttcaggcgtgattgtaaagggaagaaactctatagatgctgtagtttttaaaact 359
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 393 taatgttcaggcgtgattgtaaaggggagaaactctatagatgctgtagtttttaaaact 334
Query: 360 gaaggacaagaattcactgtgtgtaatcagaacgtccttttgaaagcagatacattctct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gaaggacaagaattcactgtgtgtaatcagaacgtccttttgaaagcagatacattctct 274
Query: 420 ttgccaaatgatgttacctatggcaataaacctgaaatttcttggctctaagccagtaag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ttgccaaatgatgttacctatggcaataaacctgaaatttcttggctctaagccagtaag 214
Query: 480 acacaggaataca 492
|||||||||||||
Sbjct: 213 acacaggaataca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 893
Length adjustment: 10
Effective length of query: 482
Effective length of database: 883
Effective search space: 425606
Effective search space used: 425606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
