BAC Information

Click to search

BAC

Clone NameMSMg01-144B24
Chromosome1 (Build37)
Map Location 90,147,805 - 90,148,298
singlet/doubletsinglet
Overlap geneLOC100040766
Upstream geneEfhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1
Downstream gene6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144B24.T7 (MSMg01no144_b24.b1)MSMg01-144B24.TJ (MSMg01no144_b24.g1)
ACCAG348280AG348281
length743741
length of high quality
(start - end)		701 (43 - 743)503 (71 - 573)
definitionCHROMAT_FILE: MSMg01no144_b24.b1 PHD_FILE: MSMg01no144_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:52 2005CHROMAT_FILE: MSMg01no144_b24.g1 PHD_FILE: MSMg01no144_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAAT
TCAATAATTTGGAACCGAACAAACCAAATATCTCATTTAGAAATGGGGTA
CAGAGCTAAACAGAGAATGCTCAACAAAATAATTTGTAATGGTTGAAAAG
CACTTAATGAAATATTCAAGATCTTTTGATATCATGGAAATATCTCTCAA
AAATAATCTGAGATTCTACTTAACATTCATTAGAACAGCTAAGGCCAAAA
CACAAACAACTGTGCATGCTGAAGTGGATGTGGAAAAAGGAGACTATTCC
TTCATTGCTAATGTGAGTGCAAATGTGTCCAACCATTCTGGGAATAAATT
TGTAAATAATTGAGAAAATTTGGAACATGTCTACCGCAAGACTCACCTAT
ATAACTCATTCTCAAATACCCAGAACATGTTTCACCATCCAAAATAGAAA
CTTGTTCAACTCTTTTCATAGCAGCTTTATCAATAATAGCCAGAAAATGG
AAGTAACCAAGATATCCCTTAACTGAAGAATGGATAAGAAAATCAGGTAC
ATATACACAATGGAATATTATTCCATTTATTTTAATTTCTTATCAGAAAC
AAAGACATCATGAATTTTGCAGGCAAATGGGTGAAACTAGACAGTTTCTT
CCTGAGTGAGATATCCTAGACCTAAAGTGACATGCATAGTATATACTCAC
TCATAAAAGGATACTAGCCATACAACACAATATACCCATGTGA

ATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGTCTTGCTCTGATCCTAGGTGGTTTGCCC
AGAGTTTAACTTCGACGAGGTTGTCTCTCTCATCCAGAAGCTCTGTGAGA
ACATTGGGGCCATGGACCTGCAGCATGACAGGGCTGCTGTTACCTGGATA
GGCATCTTCCTCCAGATGCGGGTCAAGGAGCTGGAGGACAAGGTAACCAA
GCTCAGCAGGGGATGCTTGGATTGGTACTGGGACTGACCTGTGTAGCACA
CACGGAGAATGACCACTTCCACCCAAACTAGGAGTGCTAAAGGGGATAAA
ACAGAGTTCTAGAATGAGAAATCTGTTGAGATGTAACTAGTCAGTGAGTA
GATGAGGGACTACTGCCGCCAGGCTCTTTTCAGCAAAGCACAGTGAAGAC
ACACTGAACATGTAGGAGGAAAAGACCCATAGGGCTTCCAGAGAGGGCTT
TTGGGAGTGGGGTGTCTAACCAACACACCATGTTTCCCAAGATAGGAGTA
TCCTTCAGGGGCCCAGAAATACCTTTTATTTCTGTCTCTGTCATAAAGTA
CACTGACCAAACTCAATTTAGCAAAGTCAATGGTCAAACAGGTTATAGCT
CATCACTGAGGGACATTATTTAGCTAGTGAAATTACATCCACAGTCTACA
GTACTGTGCTGGTGCACCTCTTTCATCCCTGTACTTCGTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_b24.g1 MSMg01no144_b24.g1 CHROMAT_FILE:
MSMg01no144_b24.g1 PHD_FILE: MSMg01no144_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:52 2005
         (503 letters)



>mm_chr1_90147601_90148498
          Length = 898

 Score =  833 bits (431), Expect = 0.0
 Identities = 480/499 (96%), Gaps = 5/499 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   ttgctctgatcctaggtggtttgcccagagtttaacttcgacgaggttgtctctctcatc 64
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 205 ttgctctgatcctaggtggtttgcccagagtttaactgcgacgaggttgtctctctcatc 264

                                                                       
Query: 65  cagaagctctgtgagaacattggggccatggacctgcagcatgacagggctgctgttacc 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 265 cagaagctctgtgagaacattggggccatggacctgcagcatgacagggctgctgtcacc 324

                                                                       
Query: 125 tggataggcatcttcctccagatgcgggtcaaggagctggaggacaaggtaaccaagctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggataggcatcttcctccagatgcgggtcaaggagctggaggacaaggtaaccaagctc 384

                                                                       
Query: 185 agcaggggatgcttggattggtactgggactgacctgtgtagcacacacggagaatgacc 244
           ||||||||||||||||     ||||||||||||||||||||||||||||||||| |||||
Sbjct: 385 agcaggggatgcttgg-----tactgggactgacctgtgtagcacacacggagactgacc 439

                                                                       
Query: 245 acttccacccaaactaggagtgctaaaggggataaaacagagttctagaatgagaaatct 304
           ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 440 acttccatccaaaccaggagtgctaaaggggataaaacagagttctagaatgagaaagct 499

                                                                       
Query: 305 gttgagatgtaactagtcagtgagtagatgagggactactgccgccaggctcttttcagc 364
           |||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||| 
Sbjct: 500 gttgagatgtaactagtcagtgagtagatgagggaccactggtgccaggctcttttcagt 559

                                                                       
Query: 365 aaagcacagtgaagacacactgaacatgtaggaggaaaagacccatagggcttccagaga 424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 560 gaagcacagtgaagacacactgaacatgtaggaggaaaagacccatagggcttctagaga 619

                                                                       
Query: 425 gggcttttgggagtggggtgtctaaccaacacaccatgtttcccaagataggagtatcct 484
           |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 620 gggcttttgggagtcgggtgtctaacctacacaccatgtttcccaagataggagtatcct 679

                              
Query: 485 tcaggggcccagaaatacc 503
           |||||||||||||||||||
Sbjct: 680 tcaggggcccagaaatacc 698


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 898
Length adjustment: 10
Effective length of query: 493
Effective length of database: 888
Effective search space:   437784
Effective search space used:   437784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |