Query= MSMg01no144_h16.b1 MSMg01no144_h16.b1 CHROMAT_FILE:
MSMg01no144_h16.b1 PHD_FILE: MSMg01no144_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:19 2005
(492 letters)
>mm_chr1_71450503_71451394
Length = 892
Score = 861 bits (445), Expect = 0.0
Identities = 477/493 (96%), Gaps = 10/493 (2%)
Strand = Plus / Minus
Query: 5 gaattccacaccttctcctccaaaagaattttctctttaaagagtaacgatggtttctcg 64
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 gaattccacaccttcttttccaaaagaattttctctttaaagagtaacgatggtttctcg 633
Query: 65 tagcaaatggttaaatccacaatcattcaatttttaaaaattcagttccctatagtgcac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tagcaaatggttaaatccacaatcattcaatttttaaaaattcagttccctatagtgcac 573
Query: 125 atttcaattgagtcatataaagcataataggtattttgtatccagaatatttgaaaaaca 184
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 572 atttcaattgagtcatataaagcataataggtattttgtatccagaatgtttgaaaaaca 513
Query: 185 gactccaactctcaactactcaaagactaggcaagaataacaatattgtttataagtctg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gactccaactctcaactactcaaagactaggcaagaataacaatattgtttataagtctg 453
Query: 245 tggcaacaatatttccttccaatctgctctctgcaatgatttctttttttaatcctcaaa 304
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 452 tggcaacaatatttctttccaatctgttctctgcaatgatttctttttttaatcctcaaa 393
Query: 305 acggcacagtaattatatcaaaaagtcttgccctgaatattttgagattcacacccatgc 364
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 acagcacagtaattatatcaaaaagtcttgccctgaatattttgagattcacacccatgc 333
Query: 365 tcacaaccccccc-----actcattgtgtatgacgttggacaagttctgctagcatctgg 419
|||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tcacaa-----cctgtttactcattgtgtatgacgttggacaagttctgctagcatctgg 278
Query: 420 taagcagaagacgtacaggagctgtaacagataaagagtcctttgcatcactgatgcctt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 taagcagaagacgtacaggagctgtaacagataaagagtcctttgcatcactgatgcctt 218
Query: 480 tgctgtgtttggc 492
|||||||||||||
Sbjct: 217 tgctgtgtttggc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no144_h16.g1 MSMg01no144_h16.g1 CHROMAT_FILE:
MSMg01no144_h16.g1 PHD_FILE: MSMg01no144_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:19 2005
(339 letters)
>mm_chr1_71325178_71325916
Length = 739
Score = 609 bits (315), Expect = e-179
Identities = 333/339 (98%)
Strand = Plus / Plus
Query: 1 tcttttacctggacattgtcggaacaggagcaaacaccaaagttgtcgatagcttctcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttttacctggacattgtcggaacaggagcaaacaccaaagttgtcgatagcttctcca 260
Query: 61 cttgtgttccactttcccagatcatctttttttaaacactgcctataaagaaaaaggata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgtgttccactttcccagatcatctttttttaaacactgcctataaagaaaaaggata 320
Query: 121 ttgaagtgagatgtgtgcatatgtgcatccacattggtagctcataaccacttataactc 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgaagtgagatgtgtgcatgtgtgcatccacattggtagctcataaccacttataactc 380
Query: 181 cagttccaagagatccaatactctcttctgatctccatggacacaaggtgtgcaatgtgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagttccaagagatccaatactctcttctgatctccatggacacaaggtgtgcaatgtgg 440
Query: 241 tgcacatactattatgcactcacacatacacataaaataagcaataaacaaatctttaca 300
||||||||| | | ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 tgcacatacaagcaggcactcacacatacacataaaataagcaataaacaaatctttaaa 500
Query: 301 atcaataaaacgggattaacattattattctaatgttgt 339
|||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcaataaaacgggattaacattattattctaatgttgt 539
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space: 240900
Effective search space used: 240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
