Query= MSMg01no144_l02.b1 MSMg01no144_l02.b1 CHROMAT_FILE:
MSMg01no144_l02.b1 PHD_FILE: MSMg01no144_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:35 2005
(664 letters)
>mm_chr1_167577539_167578602
Length = 1064
Score = 1193 bits (617), Expect = 0.0
Identities = 652/667 (97%), Gaps = 6/667 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaagctgaacttgcaaggccatgaaagcatgccctactcttcaactcatcgcta 63
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ggaattcaagctgaacttgaaaggccatgaaagcatgccctactcttcaactcatcgcta 257
Query: 64 cgggagaatctgttttctttcaaacccttaaagaaatccaaacaaaacaagatctcccct 123
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 258 cgggagaatctgttttctttcaaacccttaaagaaatccaaacaaaataagatcttccct 317
Query: 124 gcctggttctgaaaacctgtcactcaagacacagaccagctttgtgcatacatcctgtcc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gcctggttctgaaaacctgtcactcaagacacagaccagctttgtgcatacatcctgtcc 377
Query: 184 tcaaagtctttgagaccttcctgcctcggtctccctagtaaagggattacaggcgtgagt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tcaaagtctttgagaccttcctgcctcggtctccctagtaaagggattacaggcgtgagt 437
Query: 244 caccaagcttagctgcaggtgatctttaaacccaaatatcatctctaggcacagtgctgc 303
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 438 caccaagcttagctgcaggtgatctttaaagccaaatatcatccctaggcacagtgctgc 497
Query: 304 atgcctttggtcccagcactcagaggcagaggcag------ggggatctctatgagtttt 357
||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 498 atgcctttggtcccagcactcagaggcagaggcagaggcagggggatctctatgagtttt 557
Query: 358 gaggcccgcctgatctataaagtattctccaggacagccagaactgtagacagaccctgt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gaggcccgcctgatctataaagtattctccaggacagccagaactgtagacagaccctgt 617
Query: 418 ctcaacaccccccaaatgtggagtcctccctatctaccatagaagcgcagcacttggtct 477
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 618 ctcaacaacccccaaatgtggagtcctccctatctaccatagaagtgcagcacttggtct 677
Query: 478 tggttgcttcagaaaggggagcaaacattgccaggggaggacaggaaagcatctgccctg 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tggttgcttcagaaaggggagcaaacattgccaggggaggacaggaaagcatctgccctg 737
Query: 538 tcggaacaccctgccaagaggactcttgggactgaagagcccccgggaatagagtgggct 597
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ttggaacaccctgccaagaggactcttgggactgaagagcccccgggaatagagtgggct 797
Query: 598 attttcataaactagaacaaatgacgtaagtaacaggagctaggattggggaatggacaa 657
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 798 attttcataaactagaacaaataacgtaagtaacaggagctaggattggggaatggacaa 857
Query: 658 aggtacc 664
|||||||
Sbjct: 858 aggtacc 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no144_l02.g1 MSMg01no144_l02.g1 CHROMAT_FILE:
MSMg01no144_l02.g1 PHD_FILE: MSMg01no144_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:35 2005
(589 letters)
>mm_chr1_167655494_167656482
Length = 989
Score = 1114 bits (576), Expect = 0.0
Identities = 585/588 (99%), Gaps = 1/588 (0%)
Strand = Plus / Minus
Query: 1 aatatcagatagcaattatagctggatggtgacgcatggatgcccgcacacggagctggc 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 785 aatatcagatagcaattatagctggatggtgacgcatgcatgcccgcacacggagttggc 726
Query: 61 ctataatccctgcactgcagaggctgaggcagcaggatcctaagttcaaagacagcctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ctataatccctgcactgcagaggctgaggcagcaggatcctaagttcaaagacagcctgg 666
Query: 121 gctacgtcataagatatctgtatcaaaagagccaaagaaatgaaacttgacaataaataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 gctacgtcataagatatctgtatcaaaagagccaaagaaatgaaacttgacaataaataa 606
Query: 181 acgaaacacagcaggtcagacttatatttaagatgagtttgaaatacagttctctgaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 acgaaacacagcaggtcagacttatatttaagatgagtttgaaatacagttctctgaaaa 546
Query: 241 atgtaaaacccacagaacacttgattcatttagaacttcagattaattattgcacaggac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 atgtaaaacccacagaacacttgattcatttagaacttcagattaattattgcacaggac 486
Query: 301 atatttatacagaaaatttggtattccatattaactagatgtcctgtgtttttgtttgag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 atatttatacagaaaatttggtattccatattaactagatgtcctgtgtttttgtttgag 426
Query: 361 aaatctgtcagctttattttaaaatcttaattccaaattccttcctagacctgacaagtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aaatctgtcagctttattttaaaatcttaattccaaattccttcctagacctgacaagtc 366
Query: 421 tttaaatctccccccccccgcccccgctgcccccgccgcccccagtttaggcctttcggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tttaaatctccccccccccgcccccgctgcccccgccgcccccagtttaggcctttcggt 306
Query: 481 ctcaaccccacactctcctgacttgttctgtccaaagatgtgttgcctggtcctgctgtg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ctcaaccccacactctcctgacttgttctgtccaaagatgtgttgcctggtcctgctgtg 246
Query: 541 agagtcaccttcctaaaacataaacctgtcccataccaaaaaaaaaaa 588
|||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 245 agagtcaccttcctaaaacataaacctgtcccatac-aaaaaaaaaaa 199
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
