BAC Information

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BAC

Clone NameMSMg01-144L09
Chromosome1 (Build37)
Map Location 120,821,202 - 120,821,584
singlet/doubletsinglet
Overlap geneGli2
Upstream geneEG666785, EG634762, LOC100042368, LOC637083, Tsn, Mki67ip, Clasp1, Tcfcp2l1, LOC100041753
Downstream geneLOC666838, LOC100041778, Inhbb, Ralb, Tmem185b, Epb4.1l5, Ptpn4, LOC100042447, LOC666870, LOC100041863, Tmem177, Gm101
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144L09.T7 (MSMg01no144_l09.b1)MSMg01-144L09.TJ (MSMg01no144_l09.g1)
ACCAG348708AG348709
length710720
length of high quality
(start - end)
577 (54 - 630)192 (127 - 318)
definitionCHROMAT_FILE: MSMg01no144_l09.b1 PHD_FILE: MSMg01no144_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:36 2005CHROMAT_FILE: MSMg01no144_l09.g1 PHD_FILE: MSMg01no144_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAACCGCG
GATTCTTCCAATCTCCCAAAATAACCATAGAGACAACTATTCTTTGATGA
CGGTGGGGATGGAATGACCTATGGCCATGCCAGAAGTTTCACTCGATGGT
TTCTAAGCCATGGAACAAAGTCATGGTGACTAATACAAGGAACTGTGGTA
GAACAGAGTCCAACAAGATGTAATAGCCCATTTGGCTTGTTGATCAGAGT
CTCATGTAGTCCAGGCCAGCCTCAGACCCCTGAGTTCTGACATGACAGGT
ATATGCCACCACTCCTCATTTATGTGCTGCTGGCGAGTGAACCCAGGGCT
TCCGGCATGCCATGCCACATCTACTGACTGAGCAACATCCCCAGACCCTT
TGCCTGTCTTTTCTCACAAAGGTTACATTTTTATTTATGTGTATGTGTTT
GTGTCTGTGCATGTAGGTGCCTGTGGAGGCTAGAAAAAGGAATCAGATCC
ATTGGAACTGGGAGTTAGGGACAGTTGTGAGCCATCGGTGTGGGTGCTAG
GAAGTGCCCTGTGTCCTCTGGAAGAGCAGCAGACACTCTTAACTTCTGAG
CCATCTTCCCAGCCCCTTAACCTATTTGCAATAGGGATGGCTGTTCTGCT
GCTATTACAGAATGCCAGGGACTATGCAGTTTATACAGAAGAGCAATGGC
CCTGGGGAAA
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCCGCATTCGAGNGGNGCACAGATACACATGCAGACA
AAACACAATCCATACACATTAACCCAAATTATTATTATTTTAAAAAAGAA
TTTGTACTGATTTTTCAGAGGACAAGTGTTCAATTCCCAGCATCTAGGTT
GGGCAGCTGACAACCACTTCTAACTCCCATCCCAGGAGATCTGGCACCCT
CTTCTGTTCTCTGTGGGAATTGCACTTGTGTGCACATAATCCCTCTCACA
TGATTTGAAAAACAGTATTAGAGTGAGGTATGACGAAGCATCCTTTAATC
CCAGCAATCAGAGGGCACCCCGCTGGAAGATCTCTGTGATTTCCAGGCCA
GCCTGGCTTATACGTCAAGTTCTAGGCTGGCCAGGGTAACATAGACAGAC
TCTCTCAAAGACAACAAATCAATTAAAATATTTTTAACACAGGGAAGCTG
CAAATGAGCTGTTTTAGTAATTATTGTTAATACAGAAAAAACTACAGCTG
TCATCTCAGAAGTAATAAGAAATAGTTTATTCAGGACTCANATACAAGTG
ACCCTCACCTGGAAACACAGATTTAGGTTCACAAAACTTCTGTATTTCAA
TGTGGCAACGTTTGTATGAAGTCTTTACTACAACGAAACATAGGAAGTCA
TAAGTCAAGTAATTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_l09.b1 MSMg01no144_l09.b1 CHROMAT_FILE:
MSMg01no144_l09.b1 PHD_FILE: MSMg01no144_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:36 2005
         (577 letters)



>mm_chr1_120821202_120822181
          Length = 980

 Score =  640 bits (331), Expect = 0.0
 Identities = 370/383 (96%), Gaps = 3/383 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttcc-aatct-cccaaaataaccatagagac-aactattctttgatgacggtggggat 57
           |||||| ||||| | |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 383 tcttccaaatctacacaaaataaccatagagacaaactattctttgatgacggtggggat 324

                                                                       
Query: 58  ggaatgacctatggccatgccagaagtttcactcgatggtttctaagccatggaacaaag 117
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggaatgacctatggccatttcagaagtttcactcgatggtttctaagccatggaacaaag 264

                                                                       
Query: 118 tcatggtgactaatacaaggaactgtggtagaacagagtccaacaagatgtaatagccca 177
           ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 263 tcatggtgactaatacaaggaaccgtggtagaacagagtccaacaagatgtgatagccca 204

                                                                       
Query: 178 tttggcttgttgatcagagtctcatgtagtccaggccagcctcagacccctgagttctga 237
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 203 tttggctggttgatcagagtctcatgtagtccaggccagcctcagacccctgagtgctga 144

                                                                       
Query: 238 catgacaggtatatgccaccactcctcatttatgtgctgctggcgagtgaacccagggct 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 catgacaggtatatgccaccactcctcatttatgtgctgctggcgagtgaacccagggct 84

                                                                       
Query: 298 tccggcatgccatgccacatctactgactgagcaacatccccagaccctttgcctgtctt 357
           || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  tctggcatgccatgccatatctactgactgagcaacatccccagaccctttgcctgtctt 24

                                  
Query: 358 ttctcacaaaggttacattttta 380
           |||||| ||||||||||||||||
Sbjct: 23  ttctcaaaaaggttacattttta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 980
Length adjustment: 10
Effective length of query: 567
Effective length of database: 970
Effective search space:   549990
Effective search space used:   549990
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)