Query= MSMg01no145_d10.b1 MSMg01no145_d10.b1 CHROMAT_FILE:
MSMg01no145_d10.b1 PHD_FILE: MSMg01no145_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:14 2005
(245 letters)
>mm_chr1_83609144_83609788
Length = 645
Score = 474 bits (245), Expect = e-138
Identities = 245/245 (100%)
Strand = Plus / Plus
Query: 1 gagtgagatcatttaacaaacatcctgttcacccacggtgacaatcttggaattaactcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagtgagatcatttaacaaacatcctgttcacccacggtgacaatcttggaattaactcc 260
Query: 61 agcaaaactgataagggctgaatctcaacatactactcttgcatgtgacaaaggaaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcaaaactgataagggctgaatctcaacatactactcttgcatgtgacaaaggaaaaaa 320
Query: 121 atggtcataaaataatattatatcttccaatgaagaaaatggagattgcaaacagctatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggtcataaaataatattatatcttccaatgaagaaaatggagattgcaaacagctatg 380
Query: 181 gagaaatcaagtaagccaggttttgcataaaattggcagtctgggatagcattcatagct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagaaatcaagtaagccaggttttgcataaaattggcagtctgggatagcattcatagct 440
Query: 241 attga 245
|||||
Sbjct: 441 attga 445
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no145_d10.g1 MSMg01no145_d10.g1 CHROMAT_FILE:
MSMg01no145_d10.g1 PHD_FILE: MSMg01no145_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:14 2005
(490 letters)
>mm_chr1_83770966_83771856
Length = 891
Score = 880 bits (455), Expect = 0.0
Identities = 482/491 (98%), Gaps = 1/491 (0%)
Strand = Plus / Minus
Query: 1 ctcagctcctcctgtaccatgcctgcctagagatgccatgttcccaccttgatgaataat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 ctcagctcctcctgtaccatgcctgcctagagatgccatgttcccaccttgatgaataat 798
Query: 61 ggactgaacctctgaacctgtaagccagccccaattaaatattgttcttataaaagttgc 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ggactgaacctctgaacttgtaagccagccccaattaaatattgttcttataaaagttgc 738
Query: 121 tttagtcatggtgtctgctcgaagcagtaaaaccctaactaagataaaaccttatctaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tttagtcatggtgtctgctcgaagcagtaaaaccctaactaagataaaaccttatctaag 678
Query: 181 acaatctcctattaggaagcaaataaataatgtaccattattactaaaaagtagggcctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 acaatctcctattaggaagcaaataaataatgtaccattattactaaaaagtagggcctc 618
Query: 241 cagatgtcttcttcaattgctggtgtactgaaagtaacatgtcatttttttcccacaaaa 300
||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 617 cagatatcttcttcaattgctggtgtactggaagtaacatgtcattttttccccacaaaa 558
Query: 301 aa-gattaaagattatcttttccttattactaaagtgactttatcacacttcaccccaat 359
|| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 557 aaagattaaagattatcttttccttattactaaagtgactttattatacttcaccccaat 498
Query: 360 aaagttataaactacaataattacagatctttagtttaaattaatgataatttctattga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aaagttataaactacaataattacagatctttagtttaaattaatgataatttctattga 438
Query: 420 tatatttagagacatcaacaacgtaaacaatatgaagaaccttgggaaagaccccaaatg 479
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 437 tatatttagagacatcaacaacgtaaacaataagaagaacctcgggaaagaccccaaatg 378
Query: 480 cactcatattg 490
|||||||||||
Sbjct: 377 cactcatattg 367
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 891
Length adjustment: 10
Effective length of query: 480
Effective length of database: 881
Effective search space: 422880
Effective search space used: 422880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
