BAC Information

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BAC

Clone NameMSMg01-145D13
Chromosome1 (Build37)
Map Location 73,770,707 - 73,770,922
singlet/doubletsinglet
Overlap genenone
Upstream geneIgfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik, Pinc, LOC672208, LOC100043291
Downstream geneTns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145D13.T7 (MSMg01no145_d13.b1)MSMg01-145D13.TJ (MSMg01no145_d13.g1)
ACCAG349079AG349080
length685683
length of high quality
(start - end)
216 (376 - 591)522 (72 - 593)
definitionCHROMAT_FILE: MSMg01no145_d13.b1 PHD_FILE: MSMg01no145_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:15 2005CHROMAT_FILE: MSMg01no145_d13.g1 PHD_FILE: MSMg01no145_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGCG
GAATCCAGCTATGACCAGACCAACACCAGGGTCAGGAGTGGATACTGGCC
CTACCAAAGCCCTCCCATAACACCCTTGGGCCCTAGAGAGAGTAAATGAG
CAAATGCAGATGTGTTGCTGTGATGTTCCTTCTCCAGCCACATTGGGTGA
CAAGGTGTTAGCAATGATGTCACCTATGACACTCATTCTGCTCAACCCAT
TATCTGGCAGAGGTCATAGCGTATGTTCTAAAGGGCCAAGAATTATCTCA
TAGCAAAAACCTCTGTTNCATCAGATAGGACTGTCTCTGGGCCTCAGGAG
GCTCCACTGATTTACACCACCATGTAGGGGCTCCCACTTGCTCTGAGGCT
AAGGAGCCTGCAGACAGAGATATGGCTTAAAAACTCTGCAAAGAATTTAA
TGAATAATAGAGAATGTGGGTGAATGACCTGTGCTGTCTTCACTATACTT
GAAAGTCACTGTAAAGGTCTTCCACTCTGCTCTTCAGATGTGTAAGTACA
AATGATGCCTGACACAGAGTGGTCCTCATAGCCTGTGTGGATGGTGTCAA
TGAAAACAGAAACCCTTAGCTACGGATACTGAGTTTTATTTGCTGCATGG
TCTTTATGTTGATAAAATAGATTGTATTTGTAAGC
NNNCGATGCTGTGGTAGGCTGGCGGCGCCTGTTCCAAAXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGGGTGTTACTTCAGTTTTGTTGTGTCTG
TTGAGGTTTCCTTTGTGTCCCAGTATTTGGTCACTTCAGGAGAGAGCTCC
ATGAACTGCTGAGAAGAGAGTATGTTCCTTGGTGTTGGAGTGAAATGTTC
TGTAGGCATCTGCTAGGTCCATTTGATTAGGGGGTCACGGCAGGCATCAG
ATGAACCTCGAAGAGATGAGAATGAAACTTGATTCAGATTAACATCACCC
ACCTGGGTCAAGACTTCGAAAGAGTCTGATGATATCAGGCAGTTTATTCC
CAACCAACTTAAGTCCAGTATAATTTGGAGAAAGAGAGATCAAACGAATA
ACCAACCAAACCAAACCAAACAAAAAAAAAGTTTCTGGGTGTAATACAAT
CCCCAGTGCACAAGGAAGCATAATAATGTTAGAGTCAGGGCACATGCCAT
CTCTTCCAAGAAGATGGGTTCTAAGAGACACACCAGCTGTGCTAGCTTAA
GGGTCTCAGGAAGACTCTGGCTGGTCTCAGCCATACAGAAGTCGAAGAGG
TGAGGAGGGCTATTAGTGACCTCTGGTCCTTGTTATGGAAACTTGGGGGG
AACCTCTGGCTGTAAGGGCCGTTTAAATTACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_d13.b1 MSMg01no145_d13.b1 CHROMAT_FILE:
MSMg01no145_d13.b1 PHD_FILE: MSMg01no145_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:15 2005
         (216 letters)



>mm_chr1_73770507_73771122
          Length = 616

 Score =  418 bits (216), Expect = e-121
 Identities = 216/216 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggggctcccacttgctctgaggctaaggagcctgcagacagagatatggcttaaaaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggggctcccacttgctctgaggctaaggagcctgcagacagagatatggcttaaaaact 260

                                                                       
Query: 61  ctgcaaagaatttaatgaataatagagaatgtgggtgaatgacctgtgctgtcttcacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgcaaagaatttaatgaataatagagaatgtgggtgaatgacctgtgctgtcttcacta 320

                                                                       
Query: 121 tacttgaaagtcactgtaaaggtcttccactctgctcttcagatgtgtaagtacaaatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacttgaaagtcactgtaaaggtcttccactctgctcttcagatgtgtaagtacaaatga 380

                                               
Query: 181 tgcctgacacagagtggtcctcatagcctgtgtgga 216
           ||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcctgacacagagtggtcctcatagcctgtgtgga 416


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 616
Length adjustment: 9
Effective length of query: 207
Effective length of database: 607
Effective search space:   125649
Effective search space used:   125649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)