Query= MSMg01no145_h14.b1 MSMg01no145_h14.b1 CHROMAT_FILE:
MSMg01no145_h14.b1 PHD_FILE: MSMg01no145_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:34 2005
(485 letters)
>mm_chr1_65723093_65723978
Length = 886
Score = 886 bits (458), Expect = 0.0
Identities = 476/484 (98%), Gaps = 7/484 (1%)
Strand = Plus / Minus
Query: 5 gaattc-aaaacctctaccgttacattgaaaatcattacattcttttatatgggattttg 63
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gaattcaaaaacctctacagttacattgaaaatcattacattcttttatatgggattttg 449
Query: 64 gaaaaagaccttggaagtataatatcctttcaatgcataggtttaaaacagcaggttctc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gaaaaagaccttggaagtataatatcctttcaatgcataggtttaaaacagcaggttctc 389
Query: 124 aggtttgatgtttacataaaagatataacctttctaaaatacatgaagatatgatttagt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aggtttgatgtttacataaaagatataacctttctaaaatacatgaagatatgatttagt 329
Query: 184 taaatattatctgtgaatagggaaagattaataccctttcaacaaaattgttacatgttt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 taaatattatctgtgaatagggaaagattaataccctttcaacaaaattgttacatgttt 269
Query: 244 tagtttaaaatacaatctattcttaaacagctttaaagaataagttatagcaagaatcaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tagtttaaaatacaatctattcttaaacagctttaaagaataagttatagcaagaatcaa 209
Query: 304 atgtggcctgtgtggtgtcttacgagataaaggctcttgttgtcaaatcaaactacctaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 atgtggcctgtgtggtgtcttacgagataaaggctcttgttgtcaaatcaaactacctaa 149
Query: 364 gtccagtccaca--cccactctcacaggaaagggataaaattgactgccaagttgtcttc 421
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 gtccagtccacagt---actctcacaggaaagggataaaattgactgccaagttgtcttc 92
Query: 422 ttactgtgaggaacatgtgtgacacaagcatatacaaagaggggggggggggaagaggga 481
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 91 ttactgtgaggaacatgtgtgacacaagcatatacaaaga-gggggggggggaagaggga 33
Query: 482 gaga 485
||||
Sbjct: 32 gaga 29
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 886
Length adjustment: 10
Effective length of query: 475
Effective length of database: 876
Effective search space: 416100
Effective search space used: 416100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_h14.g1 MSMg01no145_h14.g1 CHROMAT_FILE:
MSMg01no145_h14.g1 PHD_FILE: MSMg01no145_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:34 2005
(507 letters)
>mm_chr1_65644245_65645150
Length = 906
Score = 957 bits (495), Expect = 0.0
Identities = 504/507 (99%), Gaps = 1/507 (0%)
Strand = Plus / Plus
Query: 1 ttggaggaggacaggtgaacatcttcctttgaagagataagcctgcttgcttagctttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggaggaggacaggtgaacatcttcctttgaagagataagcctgcttgcttagctttcc 260
Query: 61 tgtcttctccagagtttatctgtgcataaacacaccttttcttctaaagaaagttcagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcttctccagagtttatctgtgcataaacacaccttttcttctaaagaaagttcagag 320
Query: 121 tatttcagctaaaaagctcagccaaaggatttaaataattcactgttttttgttctttgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatttcagctaaaaagctcagccaaaggatttaaataattcactgttttttgttctttgg 380
Query: 181 tttttttttttttcatgcaaagtctggctgttttctggtaagtgttattaaatgcttgcc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 -ttttttttttttcatgcaaagtctggctgttttctggtaagtgttattaaatgcttgcc 439
Query: 241 agttttaaaaataaaattattcctaaaacaacagttgtcatacaacaatcattattaact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agttttaaaaataaaattattcctaaaacaacagttgtcatacaacaatcattattaact 499
Query: 301 aatcaaaaagccagggcatatgacatcatctatattataaaacccactcaagaagtttaa 360
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 500 aatcaaaaagccagggcatatgacatcatctatattataaaaccaacttaagaagtttaa 559
Query: 361 gaaaaatatactgttttaacttttatctccattttgtacttaatgaaattggtaatgatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaaaaatatactgttttaacttttatctccattttgtacttaatgaaattggtaatgatt 619
Query: 421 tgtttatgtcttagaatctaggaagaaaccaaataattcattttgggcatgagtcacctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgtttatgtcttagaatctaggaagaaaccaaataattcattttgggcatgagtcacctt 679
Query: 481 aaagtaataaatataactcaggacatt 507
|||||||||||||||||||||||||||
Sbjct: 680 aaagtaataaatataactcaggacatt 706
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 906
Length adjustment: 10
Effective length of query: 497
Effective length of database: 896
Effective search space: 445312
Effective search space used: 445312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
