BAC Information

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BAC

Clone NameMSMg01-145M12
Chromosome1 (Build37)
Map Location 113,336,099 - 113,336,589
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041429, EG626652, Cdh19
Downstream geneEG666578, Dsel, LOC547247, EG626897, LOC666615
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145M12.T7 (MSMg01no145_m12.b1)MSMg01-145M12.TJ (MSMg01no145_m12.g1)
ACCAG349493AG349494
length705710
length of high quality
(start - end)
500 (45 - 544)342 (74 - 415)
definitionCHROMAT_FILE: MSMg01no145_m12.b1 PHD_FILE: MSMg01no145_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:58 2005CHROMAT_FILE: MSMg01no145_m12.g1 PHD_FILE: MSMg01no145_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXCTATTTCAAGAGGACCGCGGAA
TTCCATCTATGCCACATAAATACGGCCATAGGTGATGGCATTACAGAATT
GGAAAGCAAAAATAAAACACTTAGAAAGATGGAGAAACTCTTGGACAGAA
GTTGTGTTACAGAATAAAAGAGAGTTAGACGTGATGTTCTTACAGCAAGG
TGGGCTATGTACTGCTCTAAAACAGAAACAATGTTTTTACATGAATCATT
TCAGGGTGATCAGGGACTCACTGGCTATAGTAAAAGAAAATTTAGAAAAA
TGACAGAAAGATATATAGTCTTTTAGTAAATTGAATCATTGTTTAATAGC
CCACCCCATAAATAGCCTGATTTCAACCCTGACCATTCCCCTACTCATAT
ACTACTACTGCTATTACCATTTTGTCCCTACATATTAAACAGAGCAATGA
AATTTATTTTTCTTGGATATTTAATATATTTATATTTCAAATGTTATTCC
CTCTCCCACTTTCTCCTCTCCAATCCACCTTCCACCTGCTTCTATGAAGA
TGCTCCCTCTAACACGCACCCCTTCCCAACTTACCACCCTGGCATTCCCC
TACTCTAGGGAAATGAGCCTTCTCAGGACCAACGACTTCACCTCCTATTG
ATGCTAGACCATGCCATCTTCTCCTACATATGCAGCCTGGAGCCATGTGT
CCTTC
CGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTCTTGATGTCCTCTAGTATCATCAT
GAGATATGCTTTTAAATCTGGATCTAGATATTCGCTTGTGTTGGGGTGCC
CAGGACTAGGTGGGGTGGGAATGCTGTGTTCTGATGATGGTGAGTGGTCT
TGATTTCTGTTAGTAGGATTCTTACATTTGCTTTTCGCCATCTGGTAATC
TATGAAGCTAGCTGTTATAGTTGTCTCTGGTTGGAGCTTGTTCCTCAGGT
GACTCTGTTAGTCTCTATCTTTTTAACTGGGAGGCTGGCTCTCTCCTTAG
TTTCAGTGGTCAGAATATTTTCTGCAGGCAAGCTATCTTCTTGCAGGGAA
GGTGCCCAGATATCCCCCCGTTTGAATCTGCCACCTGGCAGAAGTTGTGT
TCCACTCACCAGAGGTCTTAGGAATCCCATGTGGAATCCTGTGTGTGTCC
TTGTGGTTGCCCGGAGACTCCATTGTGTATACACCCTCTTGTTCGAGTGC
ACTGGATTGTTTTTGTGTCCCTTTTTCACGTTGGGTTGTCTGCTTCCTTA
GTTATTGCTGTCTTAGGTTCTGTTCTTCTGTTATTGTATCTATAATCTGT
TTTCTTCTTTCCTTATGCTTTTACTATCCTCCGCTTAACTTTCGCTTGTC
TTCCCTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_m12.b1 MSMg01no145_m12.b1 CHROMAT_FILE:
MSMg01no145_m12.b1 PHD_FILE: MSMg01no145_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:58 2005
         (500 letters)



>mm_chr1_113335893_113336792
          Length = 900

 Score =  822 bits (425), Expect = 0.0
 Identities = 476/497 (95%), Gaps = 12/497 (2%)
 Strand = Plus / Plus

                                                                       
Query: 7   ttccatctatgcca-cataaatacggccataggtgatggcattacagaattggaaagcaa 65
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 207 ttccatctatgccaacataaatacggccataggtgatggcattacagaattggaaag-aa 265

                                                                       
Query: 66  aaataaaacacttagaaagatggagaaactcttggacagaagttgtgttacagaataaaa 125
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 266 aaataaaacacttagaaagatggagaaactcttggacaggagttgtgttacagaataaaa 325

                                                                       
Query: 126 gagagttagacgtgatgttctta-cagcaaggtgggctatgtactgctctaaaacagaaa 184
           ||||||| ||||||||||||| | |||||| |||||||||||||||||||||||||||||
Sbjct: 326 gagagtt-gacgtgatgttctcaacagcaatgtgggctatgtactgctctaaaacagaaa 384

                                                                       
Query: 185 caatgtttttacatgaatcatttcagggtgatcagggactcactggctatagtaaaagaa 244
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cgatgtttttacatgaatcatttcagggtgatcagggactcactggctatagtaaaagaa 444

                                                                       
Query: 245 aatttagaaaaatgacagaaagatatatagtctttt----agtaaattgaatcattgttt 300
           |||||||||||||||||||||||||||||| |        ||||||||||||||||||||
Sbjct: 445 aatttagaaaaatgacagaaagatatatagcc----caaaagtaaattgaatcattgttt 500

                                                                       
Query: 301 aatagcccaccccataaatagcctgatttcaaccctgaccattcccctactcatatacta 360
           ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 aatagcccaccccataaattgcctgttttcaaccctgaccattcccctactcatatacta 560

                                                                       
Query: 361 ctactgctattaccattttgtccctacatattaaacagagcaatgaaatttatttttctt 420
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctactgctattaacattttgtccctacatattaaacagagcaatgaaatttatttttctt 620

                                                                       
Query: 421 ggatatttaatatatttatatttcaaatgttattccctctcccactttctcctctccaat 480
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 621 ggatatttaatatatttatatttcaaatgttattccctctcccagtttctcctctccaat 680

                            
Query: 481 ccaccttccacctgctt 497
           |||||||||||||||||
Sbjct: 681 ccaccttccacctgctt 697


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)