Query= MSMg01no145_p12.b1 MSMg01no145_p12.b1 CHROMAT_FILE:
MSMg01no145_p12.b1 PHD_FILE: MSMg01no145_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:13 2005
(589 letters)
>mm_chr1_195597166_195598154
Length = 989
Score = 1093 bits (565), Expect = 0.0
Identities = 583/589 (98%)
Strand = Plus / Plus
Query: 1 acatttgtatgtgaatatgtagaaggaaagtcacaaatagtacaatctgaggaactcagg 60
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 201 acatttgtatgtgaatatgtagaaggaaagtcacaagtagtataatctgaggaactcagg 260
Query: 61 gaggaacaaatcaataatcctgtttgggaaatgacaggctgcagtttaatttagaggatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggaacaaatcaataatcctgtttgggaaatgacaggctgcagtttaatttagaggatt 320
Query: 121 agtactgttcttcaggcacaggaagaagtaaaaatgaaaggtgcagaagagacatttcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtactgttcttcaggcacaggaagaagtaaaaatgaaaggtgcagaagagacatttcat 380
Query: 181 gagaatgtgggaacacaactgaaggcatgcagtgtaaaagtgagagacagaactaagaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagaatgtgggaacacaactgaaggcatgcagtgtaaaagtgagagacagaactaagaaa 440
Query: 241 gccagaggcttgtttgggacttgttagactcagagttccatgagaccagtgtgttattat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccagaggcttgtttgggacttgttagactcagagttccatgagaccagtgtgttattat 500
Query: 301 cctataagtggctgcaattagaagtcagagacttgggtgagagaatgcacccagacagga 360
||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct: 501 cctataagtggctgcaattagaagtcagagacttgggtgagagaatgtaactagacagga 560
Query: 361 tttggactaatttgcatgcctgcaattgttgctaagagagcggaaacagtactcaggagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttggactaatttgcatgcctgcaattgttgctaagagagcggaaacagtactcaggagg 620
Query: 421 caggtgtgttgagggtagacataattggctcaaggacaaaaacctgtagaatagcaatgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caggtgtgttgagggtagacataattggctcaaggacaaaaacctgtagaatagcaatgt 680
Query: 481 gtaagtggccagggaaaggaagatgaccttgcatgcaaatttaaaccttagaattgagaa 540
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 681 gtaagtggccagggaaaggaagatgaccttgcatgcaaatttataccttagaattgagaa 740
Query: 541 atcaagacacaaaagtataataaattacaagtcagttatggatagataa 589
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atcaagacacaaaagtataataaattacaagtcagttatggatagataa 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_p12.g1 MSMg01no145_p12.g1 CHROMAT_FILE:
MSMg01no145_p12.g1 PHD_FILE: MSMg01no145_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:13 2005
(596 letters)
>mm_chr1_195706378_195707366
Length = 989
Score = 760 bits (393), Expect = 0.0
Identities = 431/447 (96%), Gaps = 7/447 (1%)
Strand = Plus / Minus
Query: 1 ctcatatgctataaagggaagctggagctagggtgagggggagataaaaagagacatgga 60
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 638 ctcatatgctataaagggaagctggagctagggt------gagataaaaagagacatgga 585
Query: 61 taaattagaaaaagtgggctgaaaagttgtagacactgttttatcagcacatcagaagcc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 -aaattagaaaaagtgggctgaaaagttgtagacactgttttatcagcacatcagaagcc 526
Query: 121 aacattttctgtcccacttctcagaacctctatacttaccttttccaccttgtctaaaga 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 525 aacattttctgtcccacttctcagaacctctatacttacctttcccaccttgtctaaaga 466
Query: 181 tgggaatgctagaaaccacccagtgactcctgatgctgtgtttcctgaggcccaagaaat 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 465 tgggaatgctagaaaccacccagtgactcctgatcctgtgtttcctgaggcccaagaaat 406
Query: 241 attgctgacatggccaaacctgtcgagtctatatagcatcgactccatagcactatcgtg 300
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 405 attgctgacatggccaaacctgtcgagtttatacagcatcgactccatagcactatcgtg 346
Query: 301 gtggtcatctcctgttactgggtagactgagaaggctcaaaaccccgcttattctgggat 360
|||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||
Sbjct: 345 gtggtcatctcctgttactgggtagactgagaaggctcaaaatcttgtttattctgggat 286
Query: 361 aaaatggatgccaacctagaatcagaaatgtttactcattgtataggccatgaagtaaat 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 285 aaaatggatgccaacctagaatcagaaatgtttactcattgaataggccatgaagtaaat 226
Query: 421 ctttctctcacgtctaaggattaagac 447
|||||||||||||||||||||||||||
Sbjct: 225 ctttctctcacgtctaaggattaagac 199
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 989
Length adjustment: 10
Effective length of query: 586
Effective length of database: 979
Effective search space: 573694
Effective search space used: 573694
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
