Query= MSMg01no145_p18.b1 MSMg01no145_p18.b1 CHROMAT_FILE:
MSMg01no145_p18.b1 PHD_FILE: MSMg01no145_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:14 2005
(491 letters)
>mm_chr1_42500537_42501427
Length = 891
Score = 837 bits (433), Expect = 0.0
Identities = 460/469 (98%), Gaps = 1/469 (0%)
Strand = Plus / Minus
Query: 23 ctaggttgacctttccagaatattctaaagggaaataaaaggctgtcctttgaagatact 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 ctaggttgacctttccagaatattctaaagggaaataaaaggctgtcctttgaagatact 824
Query: 83 cttcatggtggtctcaggtgaggctcttcctggcagggcaagatgggcctcttagggcct 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 cttcatggtggtctcaggtgaggctcttcctggcagggcaagatgggcctcttagggcct 764
Query: 143 gatttgctagaatttataattaaaaaattgtaataataataattttgtgcatgcatgcat 202
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 763 gatttgctagaatttataatt-aaaaattgtaataataataattttgtgcatgcatgcat 705
Query: 203 gcatgtgtgcatgggtgtgtatgtatgaaatgtgtgaaccacatttccacattttgagtg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 gcatgtgtgcatgggtgtgtatgtatgaaatgtgtgaaccacatttccacattttgagtg 645
Query: 263 tggggttcagggaagaacttatagtaccgggtctggcttccttccactgtatgttcaagg 322
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 644 tggggttcagggaagaacttatagtaccgggtctggtttccttccactgtaggttcaagg 585
Query: 323 gaaggaacacgggtggggcaggcgagcaaggagggtacttttatgcctagcccgcctcaa 382
||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct: 584 gaaggaacacgggtggggcaggcgagcaaggagggtacttttacacctagtccgtctcaa 525
Query: 383 cgggctgatttgctggcatttttcacaagagatatttcatattggaaaacaggcaacaga 442
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ccggctgatttgctggcatttttcacaagagatatttcatattggaaaacaggcaacaga 465
Query: 443 atgatctacaaattaggtgtgacatgcgaattaataaaagtgggctgtg 491
|||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 464 atgatctacaaattaggtgtgacatgggaattaataaaagtgggctgtg 416
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_p18.g1 MSMg01no145_p18.g1 CHROMAT_FILE:
MSMg01no145_p18.g1 PHD_FILE: MSMg01no145_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:14 2005
(556 letters)
>mm_chr1_42407871_42408825
Length = 955
Score = 990 bits (512), Expect = 0.0
Identities = 548/566 (96%), Gaps = 11/566 (1%)
Strand = Plus / Plus
Query: 1 ttgggaatgtgagtggcaatgagttacaatcaaaaacttgtatgacaggttgatgatgct 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ttgggaatgtgagtggcaacgagttacaatcaaaaacttgtatgacaggttgatgatgct 250
Query: 61 taaatctctcgagattggctcttagtgaatggaagtgcgcagattctgtccccagctcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 taaatctctcgagattggctcttagtgaatggaagtgcgcagattctgtccccagctcat 310
Query: 121 tctaaactcaaatctgaatgcgctcatttaaattgtcaccaggggcagtggtaagtatta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tctaaactcaaatctgaatgcgctcatttaaattgtcaccaggggcagtggtaagtatta 370
Query: 181 gttagtgagagccatcatctaaaatacacattctacacgtgtcccgacatccagcagcgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gttagtgagagccatcatctaaaatacacattctacacgtgtcccgacatccagcagcgt 430
Query: 241 gacaaggatagtgaacagtttaggttcattcttgagaaaatgtaaactacacatcactga 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 431 gacaaggatagtgaacagtttaggttcattcttgagaaaatgcaaactacacatcactga 490
Query: 301 aaggcaaactctcaataaagcatcttcattggtaccaaaaaaaaaaaaaaaaaaaa---- 356
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aaggcaaactctcaatgaagcatcttcattggtaccaaaaaaaaaaaaaaaaaaaaaaaa 550
Query: 357 ------gtgggtcccgcttccacactgttttccacagaactaccacagggggaaagatgc 410
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 551 aaaaaagtgggtcccgcttccacactgtttcccacagaactaccacagggggaa-gatgc 609
Query: 411 cagcacatgagagccatagcaaaggaagcacagagtgataaataataagattcattaaga 470
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 610 cagcacatgagagccatagcaaaggaagcacagagtaataaataataagattcattaaga 669
Query: 471 aaaaacaatagaatgggaagcagcagtcattggctccagattcataactcttcagtctgc 530
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 670 aaaaacaatagaatgggaagcagcagtcattggctccagattcttaactcttcagtctgc 729
Query: 531 ttgtccacaataagctttgtggtgtg 556
| ||||||||||||||||||||||||
Sbjct: 730 tcgtccacaataagctttgtggtgtg 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 955
Length adjustment: 10
Effective length of query: 546
Effective length of database: 945
Effective search space: 515970
Effective search space used: 515970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
