BAC Information

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BAC

Clone NameMSMg01-146A05
Chromosome1 (Build37)
Map Location 141,389,477 - 141,390,222
singlet/doubletsinglet
Overlap geneAspm
Upstream geneNek7, LOC545363, LOC667745, Lhx9, 2310009B15Rik, 1700019P21Rik, LOC100042623, Dennd1b, Crb1, Zbtb41
Downstream geneF13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399, EG545367, Cfh, Kcnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146A05.T7 (MSMg01no146_a05.b1)MSMg01-146A05.TJ (MSMg01no146_a05.g1)
ACCAG349662AG349663
length1,2101,217
length of high quality
(start - end)
766 (124 - 889)712 (91 - 802)
definitionCHROMAT_FILE: MSMg01no146_a05.b1 PHD_FILE: MSMg01no146_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:17 2005CHROMAT_FILE: MSMg01no146_a05.g1 PHD_FILE: MSMg01no146_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCACTCTTTTGNNAACATTGCGCGCTAXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTGTGTAGGCTTTCCCCATTAAGAGAAAGAACTATGAAGA
CCAGGTTAGTTTCAACCTAATCAGTTAAATGCATCCCCCATTGATTCATT
TAATAAGTATTTACTAACTCTTACCAGAAGCAAAATGCTGTGAACATTTT
GAGCAGGAGAACACTGGGTGAGTGGAGAAGAGCTAAGTACATAGTAAAGC
ATCATTGCTGTGGCTTTGGGCATTGCCTAGTTGCACAAAAACTTCCATGT
TAAGTAGCTCAAAAAGCATGCTTGGAAGTTGGTTATAATTACATCACTTG
TTTTCTATATTAAATTAAAATATATTGTGTATCAACTGTCAGAAGTCCTG
TGGAACCTTGTGAGGTGGAAAAAAAATTGTTTAAAGTGCTTCAATAAGGC
ATGTGACATGATGGGATCAGAGTGGAGTTTGCAGAATGGAAGTTTAACGT
TTACACTGAGAGCCAATGCCCACGCAGTTTCTGGTGAAGACAAAATCTAG
TCTGTGCTTGTAAGAAAGGACAGTTGAATGGTTAAGGTAGTACAGAAAGC
AAGGATGTAAGGACTGTGGTCAAATTGATGATGATGTTACTAAGAACTAA
GGATGGTGACGACAAGATCTGAGAAAAGGCTTAACCAGTCTCACCAAGGA
TCCAACCTTGAGTGCCTGGTAAATAAATGAACAGAGAAGGCGACGGTGAA
GACAAGTAACATAAGCTGCAAAGAGGCCAGCATCAATTTTAAAAATAATG
TATAGGTTATATTGGTAGTAGTGAGCAATGGTGTGAAGCTTTCTCACACT
TTAAAACACTTCATGAATGCTTCTTCTTTTTTTTTTAACAGAATTAAGCC
ACAGTGTGTTTTTGAGGCGTGATAATGTGAAAAACATTACAAACTCCCTG
CAAGCTATTCAATGGNTATGGATACCCTTGGAATTTCCTTATAATAAAAG
GAAACATTTTTCGTGTGGGAACAAAAAGGAATTATGCCCATCCATGGATA
CCTGGGAAAAATTTTTTACGGTCCAGGGTAAAACTTTTTAAAATAGTAAT
TTTTTGTTAAAAAAAAAACTGGTCAAAATTTAAAGTTTCCTAAACCGGGG
TAAAGAGAATCCTTCTTTCCCAATTTTTGAAATCTTTCAGGGCCTAATTT
TTAATAGGTN
CTGTCCCTTNTTTAAAGATGGTAGGCGGCXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTTTTAGGCTGGNGTCAGTCAAAG
GGGATATGTTTAGCCCCGTAGAGGGTTGATGCCCCACACAAGGGGGATCT
GAGGCAGGTGAGATGGGAGTGGGTGCATGGGGAAGCACACTCTCAGAGGC
CAAGGGAAGGGGGATGGGATTAAGAACACTAGGAGCAAATGGAACAGTAA
CCACCGAGCTGACTGGGATGGGGATAATGACTGAACTGTAAAGAAAGATT
AAAGAAAAAAAATAAAGAAATCATTTTATAATGTTGTACATTGTGTAGTC
TCCCCTCCCCCAGCCTGAAACCTGCTTGCTCAGGGGTGGAGCATCCCGCT
CATTCGTTCTGCCACGCCCACTGCTAGAACCTGCGGAGCCACACACATGC
ACCTTTCTACTGGACCAGAGATTATTCGGCGGGAATCGGGTCCCCTCCCC
CTTCCTTTATAACTAGTGTCGCAACAATAAAATTTGAGCTTTGATCAGAA
TGAATTTGTCTTAGCTCCGTTTCTTCTTTCGCCCTGTCTAGATTCCTCTC
TTACAGCTCAAGTAGCCTTCTAAGTCGAACCGTTCATGTTGCGAGCTGCT
GGCGGCCACAACATTTTGGCGCCCGAACAGGGACCTGAAGAATGGCAGAG
GGATGCTAAGAGGAACGCTGCTGCTGTGGAGCTCCACAGGAAAGGATCTT
CGTATCGGACATCGGAGCAATGGACAGGTACACATGCTAGCGCTAGCTTA
AAATTTCAGTTTTGTAAAGTGTTGCTGAGGATGCGGTAGGATACGAATTA
AGCTTGAATTCGTGCTAACCCAACGCTGGTTCTGCTTGGGTCCAGCACGT
GTTAATCGGAACTAGAAACGGAAACAGGCAGGTTGGCCGCAGCTTTTTTA
GAAGCTGCTTAGGTGGAAAAAGAAAGGGTTTAAAGTCGTGGATCAGGGGG
TTGGCCTTTATTTTTCAAAATTTGTTTTCAGTTCAAAGTAGTAAGGTTTG
TAATTCCAATTATTAAAAAAATTTTTTAGGGTAAAAAAAAAAAGCTGGTG
TCCCCTGGGTCCCGGGAAAAAAAAAACCACTTCCCTTTTTTTTCTGAGAT
AAAAATTGTTGGAAAAATGTGTTAAATGGTAAAAGGGGTTTTGAACACAA
ATAAAAGGTTTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_a05.b1 MSMg01no146_a05.b1 CHROMAT_FILE:
MSMg01no146_a05.b1 PHD_FILE: MSMg01no146_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:17 2005
         (766 letters)



>mm_chr1_141389261_141390426
          Length = 1166

 Score = 1367 bits (707), Expect = 0.0
 Identities = 738/751 (98%), Gaps = 6/751 (0%)
 Strand = Plus / Plus

                                                                       
Query: 17  attgattcatttaataagtatttactaactcttaccagaagcaaaatgctgtgaacattt 76
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 attgattcatttaataagtatttactaactcttaccagaagcaaaatgctgtgaacattt 276

                                                                       
Query: 77  tgagcaggagaacactgggtgagtggagaagagctaagtacatagtaaagcatcattgct 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tgagcaggagaacactgggtgagtggagaagagctaagtacatagtaaagcatcattgct 336

                                                                       
Query: 137 gtggctttgggcattgcctagttgcacaaaaacttccatgttaagtagctcaaaaagcat 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gtggctttgggcattgcctagttgcacaaaaacttccatgttaagtagctcaaaaagcat 396

                                                                       
Query: 197 gcttggaagttggttataattacatcacttgttttctatattaaattaaaatatattgtg 256
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gctaggaagttggttataattacatcacttgttttctatattaaattaaaatatattgtg 456

                                                                       
Query: 257 tatcaactgtcagaagtcctgtggaaccttgtgaggtggaaaaaaaa-ttgtttaaagtg 315
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 457 tatcaactgtcagaagtcctgtggaaccttgtgaggtggaaaaaaaaattgtttaaagtg 516

                                                                       
Query: 316 cttcaataaggcatgtgacatgatgggatcagagtggagtttgcagaatggaagtttaac 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 cttcaataaggcatgtgacatgatgggatcagagtggagtttgcagaatggaagtttaac 576

                                                                       
Query: 376 gtttacactgagagccaatgcccacgcagtttctggtgaagacaaaatctagtctgtgct 435
           ||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 577 gtttacactaagagccaatggccacgcaatttctggtgaagacaaaatctagtctgtgct 636

                                                                       
Query: 436 tgtaagaaaggacagttgaatggttaaggtagtacagaaagcaaggatgtaaggactgtg 495
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tgtaagaaaggacagttgactggttaaggtagtacagaaagcaaggatgtaaggactgtg 696

                                                                       
Query: 496 gtcaaattgatgatgatgttactaagaactaaggatggtgacgacaagatctgagaaaag 555
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 gtcaaattgatgatgatgttactaagaactaaggatggtgacgacaagatctgagaaaag 756

                                                                       
Query: 556 gcttaaccagtctcaccaaggatccaaccttgagtgcctggtaaataaatgaacagagaa 615
           ||||||||||||||||||||||||||||||||||||||||||||||||||||     |||
Sbjct: 757 gcttaaccagtctcaccaaggatccaaccttgagtgcctggtaaataaatga-----gaa 811

                                                                       
Query: 616 ggcgacggtgaagacaagtaacataagctgcaaagaggccagcatcaattttaaaaataa 675
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 812 ggcgacggtgaagacaagtaacatacgctgcaaagaggccagcatcaattttaaaaataa 871

                                                                       
Query: 676 tgtataggttatattggtagtagtgagcaatggtgtgaagctttctcacactttaaaaca 735
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 tgtataggttatattggtagtagtgagcaatggtgtgaagctttctcacactttaaaaca 931

                                          
Query: 736 cttcatgaatgcttcttcttttttttttaac 766
           ||||||||||||||||| |||||||||||||
Sbjct: 932 cttcatgaatgcttctttttttttttttaac 962


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 766
Length of database: 1166
Length adjustment: 10
Effective length of query: 756
Effective length of database: 1156
Effective search space:   873936
Effective search space used:   873936
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)