BAC Information

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BAC

Clone NameMSMg01-146A09
Chromosome1 (Build37)
Map Location 149,793,099 - 149,793,739
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100042792
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146A09.T7 (MSMg01no146_a09.b1)MSMg01-146A09.TJ (MSMg01no146_a09.g1)
ACCAG349670AG349671
length1,2161,214
length of high quality
(start - end)		643 (85 - 727)735 (88 - 822)
definitionCHROMAT_FILE: MSMg01no146_a09.b1 PHD_FILE: MSMg01no146_a09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:18 2005CHROMAT_FILE: MSMg01no146_a09.g1 PHD_FILE: MSMg01no146_a09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTCTTTTTTTATACATTGGCGCTATAGACTCACTAAGGGAGAGGATCCG
CGGAATTCACACATTTTCTCTGTTCTGTTTAGTTCTTCGTGTATCTGGTA
TTCTTGTTTTGGACCCTATTTAAAATGACTACCCTTAGATATTTATGTGA
TTAGATTTGTTTCCAATTCTACTGTTATGGAACAATCACATTTTATTAGA
TTACCTTGTTAATTTTTTCTCTGAAGCCCTCCTTTCAATGAAATCCTTTT
TATGTACCAACTTAATTACAATGTTTATTTCCTTGCTATATTTTGGAGTA
ATTTTCTTACTGATTGTTCTGTGTCATAATATAAATTTGAACAAATGGCA
AACTACTTTCAGGTAAAAAGGCATAAATGTGGAAGAGTAGCACATTGTTG
CAATATACTTACAGTTTTCAACCCCATTTCTAGTTATTGTCACATATTTT
ATTTTTATATCTCCTATGGTGCATCATTACTATTTTAGAGCTATGCTTTA
TGACAACATCTTTATTGTTTTTTGTTGTTGTTTGTGTTTTTTGTTTTATT
TTTTGTTTTGTGTTTTAGGTATTTATTTCATTTACCTTTCCAATGCTATC
CCAAAAGTCCCCCACACGCTCCCCCACTCATTTCTGCTCCCACCCACTCC
CACTTCTTGGCCCTGGTGTTCTCCTGTACTGAGGCATATAATGTTTGCAT
GACCAATTGCCCTCTCTTTCCACTGATGGCCAACTAGGCCATCTTCTGAT
ACATATACAGTTAGAAACATGAGCTCCAGGGGGTACTGGTTAGTTCATAT
TGTTATTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGTTACTTT
CTCTAGCTCCTCCTTTGAGGGCCCTGTGATCCATCCAATAGCTGACTGTG
AGCATCACCTTTTGTGTTTGCTAGGCCCTGACATATCTTCCAATAAACAT
GAACTATCTGGGTCTTTTCTGCAAATCTTTGCCTATGTTATAGCAATGGT
GGCCCCTTTTCTGAAACTTAATTTTGCGATTTTTCCTCCCCATATTTCCT
CCCTCCTAAATGGGCCTTCCCTTTTTCTTTTCTATCCCCATTTTTTTTTT
GTTTTCCCCTCTCCCATGGTTTGTCTTTCTCCTCCCCTCACAATTTCTTT
TTCCATATTTTCTTTGTTTTACTTCACATTTTTCTCTTATTTCCTCTTCT
ATATCTCATCAACATT

CTGTTCTTTTTTTAAACATGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAAGGTTAGCTATGTACCCCA
ATTTTTAATACGGTTACTATTTCTCTAGAATCTAACTTCTTGATTTCATT
ATATATATTGGATATTAGCACTCTATCAGGTATAAGATTGCTAAAGATTT
TTTTCTAATTTGTTGGTTGCCATTTTGTCCTATTGCCAGTATCCTTTGCC
TTATAGATATTTTTTGATTTGATAAATTTCCATTTGTCAATCTTGATCTT
AGAGCATAAGCCACTGGTATTCTGTCCAGGAATGTTTCCCTGTCCTCATG
TGCTTGAAGCTCTTCCACACTTCCTCTTCTATTAGTTTGTGCAATGTATC
TGTTTTTTTGTTTGTTTGTTTTCTTGTTGTTGTTATAATATTTTTTTAAC
TAGGTATTTTTTCTTTTTCTAATTTTTATTAGATATTTTCCTAATTTACA
TTCAAATGCTATCCTGAAAGTCCCTTATACCCTCCCCCCCTGCTCCCCTA
CTCACACACTCTCACATCTTGGCCTTGGTGTTCCCCTGTACTGGGGCATA
TATAGTTTGCTAGATCAAGGAATCTCTCTTCCCAATGATGGCCAACTAGG
CAATCTTCTGCTACATATGCAGCTACAGACAGGAGCCTTGGGGGTACTGG
TTAGTTTATATCATTGTTCCACATATAGGGTTGCAGACCCCTTTAGCTCC
TTGGGTACTTTCTCTAGCTACTTCATTGGGGCCCCTGTTTCTACTGCTGC
ACCTGAGGATCCATAGCATAATCCGCCAACAAACGAAGACACTATTGCAT
ACACCAGCAAGATTTTTCTGAAAGGACCCTGATATAGCTGTCTCTTTTGA
AGCTATGCCAGTGCCTGGCAAACACAGAAGTGGACGCTCCCGGTCCGCTT
TTTGAATGTACCTGTTTTTTTTTTCCATTTTTTATTAGGTAATTAGTTCA
ATTTAAATTTCCCAAGTTAACCCCAAAGGCCCCCCTTTAACACTTCTTAT
TCCTTTCTTTTTTATCAACACTTTTCCTCCTTTTTGCCTTTCGTTATATC
TCTCTTTCTTCTGTTCTATTCCGCTTCTGTGCTTATTATTTCTCCTTTTT
CCTCTTTATTTTTTTCTTAATCCTTTTTCTTGTCTCTTTTCTTTTCTTAT
CTCTCTTTATCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_a09.b1 MSMg01no146_a09.b1 CHROMAT_FILE:
MSMg01no146_a09.b1 PHD_FILE: MSMg01no146_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:18 2005
         (643 letters)



>mm_chr1_149793095_149794137
          Length = 1043

 Score = 1145 bits (592), Expect = 0.0
 Identities = 630/644 (97%), Gaps = 4/644 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcgtgtatctggtattcttgttttggaccctatttaaaatgactacccttagatattt 60
           |||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||
Sbjct: 645 cttcgtgtatctggtattcttgttttggactctatttaaaatgactacttttagatattt 586

                                                                       
Query: 61  atgtgattagatttgtttccaattctactgttatggaacaatcacattttattagattac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 585 atgtgattagatttgtttccaattctactgttatggaacaatcacattttattagattaa 526

                                                                       
Query: 121 cttgttaattttttctctgaagccctcctttcaatgaaatcctttttatgtaccaactta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 cttgttaattttttctctgaagccctcctttcaatgaaatcctttttatgtaccaactta 466

                                                                       
Query: 181 attacaatgtttatttccttgctatattttggagtaattttcttactgattgttctgtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 465 attacaatgtttatttccttgctatattttggagtaattttcttactgattattctgtgt 406

                                                                       
Query: 241 cataatataaatttgaacaaatggcaaactactttcaggtaaaaaggcataaatgtggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 cataatataaatttgaacaaatggcaaactactttcaggtaaaaaggcataaatgtggaa 346

                                                                       
Query: 301 gagtagcacattgttgcaatatacttacagttttcaaccccatttctagttattgtcaca 360
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gagtagcacattattgcaatatacttacagttttcaaccccatttctagttattgtcaca 286

                                                                       
Query: 361 tattttatttttatatctcctatggtgcatcattactattttagagctatgctttatgac 420
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 285 tattttatttttatatctcctatggtgcatcattaatattttagagctatgctttatgac 226

                                                                       
Query: 421 aacatctttattgttttttgttgttgtttgtg-ttttttgttttattttttgttttgtgt 479
           |||||||||||||||||   |||||||||||| |||||||||||||||||||||||||||
Sbjct: 225 aacatctttattgtttt---ttgttgtttgtgtttttttgttttattttttgttttgtgt 169

                                                                       
Query: 480 tttaggtatttatttcatttacctttccaatgctatcccaaaagtcccccacacgctccc 539
           |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 168 tttaggtatttatttcatttacatttccaatgctatcccaaaagtcccccacatgctccc 109

                                                                       
Query: 540 ccactcatttctgctcccacccactcccacttcttggccctggtgttctcctgtactgag 599
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 ccacccatttctgctcccacccactcccacttcttggccctggtgttctcctgtactgag 49

                                                       
Query: 600 gcatataatgtttgcatgaccaattgccctctctttccactgat 643
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48  gcatataatgtttgcatgaccaattgccctctctttccactgat 5


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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