BAC Information

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BAC

Clone NameMSMg01-146E09
Chromosome1 (Build37)
Map Location 56,898,760 - 57,060,061
singlet/doubletdoublet
Overlap geneSatb2, EG329160, 9130024F11Rik, LOC100042869
Upstream gene9130227L01Rik, Hsfy2
Downstream geneLOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339, 2810022L02Rik, Kctd18, Sgol2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146E09.T7 (MSMg01no146_e09.b1)MSMg01-146E09.TJ (MSMg01no146_e09.g1)
ACCAG349857AG349858
length1,2441,231
length of high quality
(start - end)		736 (89 - 824)587 (87 - 673)
definitionCHROMAT_FILE: MSMg01no146_e09.b1 PHD_FILE: MSMg01no146_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:51 2005CHROMAT_FILE: MSMg01no146_e09.g1 PHD_FILE: MSMg01no146_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,898,760 - 56,899,495)(57,059,748 - 57,060,061)
sequence
NCATATTATTTNNNTAACAGTGGGCGCTATAGACTCCTATAGGGAGAGGA
TCCGCGGAATTCTCTTTTTGTAAGGAACCCCTTAAAGCCCCTAAAGAGCC
AAAAGTCAGAGACATCATACCCCTTGATTTAAAAGTACACCCCAGGAGCC
GAGGCACTATCTCAGTGATAAAGCACTTGCCTGTCACACACAGGGCCCAG
AGGTTGATCCCTAGCACCTCCAACAATCAACTTTTGTTACAAAGCTAATA
GTCAGAATTTCAGAATGTGGCTGTAAACACAAACGCATGGGCTGAAGGAA
CAGAACAGAGGGCTTGGAACTAAATCCAAACGTACAAAACTGATATTTCA
ACTAGGATACCAAAAAAACACAATGGGGATATGGAAGTTTAGTGGGATGA
GGTTCATAATTTTTAGGCCAGCTATGTACTGAGACCCTATTAACCAACCA
AACAACCAACCAACCAACCAATCAATCAATCATTAAAAAATGTTCCAGAA
AACTGGATCTTCATATCTAGAAGAATGAAGTCAGACGCTTATGCCACATA
GAAATCAACTCAAATTGGTGGGGGAAAGACCCAACTCTAAGACAAGAAAC
AGGCAAGTCAAACTATAATTTGTTAAGCTGTTAGTTGAAAATTCAGAACA
CACATTTTTAATGGAAATGCGGAAATAAGGTTTACAGGCCTATATCGAGA
AGTAGTGCATATGAAGCACAGAGCACACAGAAACCCACTTACACGTGAGC
AGACACACTAGAACCCCTCGCATGCAAAACACAGGTTTTGTGAAACTACG
ATGGTAGAACTCGTCACTGTGTCTAGAAAGTCTTCTTGCGCTAGCTACAG
AGAGCTCAGCATCTTGTCTCGTCTGCTCTTGCTGGAGAGAAGAACTTTCT
TACCCTGCACCCTCCTGTCCTCTTGCACGAGGAGGACCCTCCCACCCTCC
CTCTGGCTAAAGCTGGAAAGCCCCCATGCCTGAAAGGGTGTGGGTAAAAT
GGGAAATCGGCTCTTTTTTCTCCCTTTACCCCTTCTTTTATATTTTTTTT
TAAAAATCTCTAGTTAATTTTTTTTTTTTTAATTCTTTTCTTTGTTATTT
CATTCTTCTTGTTTCTTTATTTTCTTCTTTATGATTATGTATTTTTCTAC
TTTATTTTTTATCACTGTCCTTTTTTATCCTTATAAATACACTATCTCTA
TCTTGTTTTATTTCTCTCTTCTCCTCTTCTTCTTTCTCCCTCTT

CGGTTCTTTTTTTAAAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAACTCCACAACAACAGGTGG
ATCCTTCTACGTTGGCCCCTAATTAAGAAAATACCCCCCAACTGGATCTT
AAGGAGGTGTTTTATTTAAAAAAAAATATTTTTATTTTATGTGTATGAGT
ACACTGTAGCTGTCTACCAGAAGAGGGCATCAGATCCCATTACAGGTGGT
TGTCCCGTGAAGTTGCTGGGAATTGAACTCAGAACCTCTGAAAGCACAGC
CCTTGTTCTCAACTGTTGAGCCATCAACTCTCTAGCCCCTGGAGACAATT
TCTTAATTGAAGCTTTCTTCTCTCTGATGACTCTAGCTTGTGTAGAGCTG
ACAGGATTCTCACCAATACAGCAGGGTTTCCCTGGTAGTCTGTTTCATTC
CAGCCGTTAGGTTTCTGTCTTGGCTTCCCTAGATGATAAACTTAAGTCCT
TTCCTTTCCTCCTTAGGTTACTTTAGGTCTGTATTTATCACAGCAACAGA
AAACAACTGCTTTCCTATTTTTAAGTATTTACATTTTCTATAGAATATCT
TGTATTTTTAAAGATTTGCTTATTTTTGTTTTATATGTTTGACTGAATGT
ACGTATGCGTACCAAGTGTGTGTCTGGTGACTGCAGAGACCTATAAGAGC
ATTGAATCTCCTGAGATGTAGTTAGAAATGTCTGTGATTTGCCATATGTG
TGGTGTTAATCAAACTCAGTTTATTTTGTCTAGTTATCATTTGTTTTTAT
CTCTGAGCCATTTCTTATCCTTTGTGTAAAGTTTCTGTTTTATTATTTCT
ATTCGTGTGTATTTATTCTTTGATCTATTTTACTCTTTTTTATCGCTTTT
TTTTTTTTTTTTCTTTCTCTCCTTCAAATATGCATTTTCTTGTTTGTTTT
CTTTTATTTCTTCTTTCTCTTTCTCTTTTTTATCTTATTTTTATTTAACT
CTTTTACTTTATTTTTTCTCTCTTTTTTATTTTATTACTTTTTTTTATTC
TTCTTTATCTTTCTTTTTTTTATACTTTAATTAAATCTCTTTTTTTATTT
ATATTTAATTCTTCACTAATTTTCTCCTTTTTTTATTTGTATTTTATTTT
TATTTTTTCTCCCTATTTATTTTTTATCTTGTCCTTATTTTCCTCCCTTT
ATTTTTACTCTCTTATTCATCTCTTTTATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_e09.b1 MSMg01no146_e09.b1 CHROMAT_FILE:
MSMg01no146_e09.b1 PHD_FILE: MSMg01no146_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:51 2005
         (736 letters)



>mm_chr1_56898560_56899695
          Length = 1136

 Score = 1330 bits (688), Expect = 0.0
 Identities = 724/736 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccctaaagagccaaaagtcagagacatcataccccttgatttaaaagtacaccccaggag 60
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||  ||||||
Sbjct: 201 ccctaaagagccaaaagtcagagacatcatacttcttgatttaaaagtacactacaggag 260

                                                                       
Query: 61  ccgaggcactatctcagtgataaagcacttgcctgtcacacacagggcccagaggttgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccgaggcactatctcagtgataaagcacttgcctgtcacacacagggcccagaggttgat 320

                                                                       
Query: 121 ccctagcacctccaacaatcaacttttgttacaaagctaatagtcagaatttcagaatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctagcacctccaacaatcaacttttgttacaaagctaatagtcagaatttcagaatgt 380

                                                                       
Query: 181 ggctgtaaacacaaacgcatgggctgaaggaacagaacagagggcttggaactaaatcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggctgtaaacacaaacgcatgggctgaaggaacagaacagagggcttggaactaaatcca 440

                                                                       
Query: 241 aacgtacaaaactgatatttcaactaggataccaaaaaaacacaatggggatatggaagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacgtacaaaactgatatttcaactaggataccaaaaaaacacaatggggatatggaagt 500

                                                                       
Query: 301 ttagtgggatgaggttcataatttttaggccagctatgtactgagaccctattaaccaac 360
           ||||||||||||||||||||| ||  |||||||||| |||||||||||||||||||||||
Sbjct: 501 ttagtgggatgaggttcataagttcaaggccagctacgtactgagaccctattaaccaac 560

                                                                       
Query: 361 caaacaaccaaccaaccaaccaatcaatcaatcattaaaaaatgttccagaaaactggat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaacaaccaaccaaccaaccaatcaatcaatcattaaaaaatgttccagaaaactggat 620

                                                                       
Query: 421 cttcatatctagaagaatgaagtcagacgcttatgccacatagaaatcaactcaaattgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttcatatctagaagaatgaagtcagacgcttatgccacatagaaatcaactcaaattgg 680

                                                                       
Query: 481 tgggggaaagacccaactctaagacaagaaacaggcaagtcaaactataatttgttaagc 540
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 681 tgggggaaagacccaactctaagacaagaaacaggcaagtcaaactgtaatttgttaagc 740

                                                                       
Query: 541 tgttagttgaaaattcagaacacacatttttaatggaaatgcggaaataaggtttacagg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgttagttgaaaattcagaacacacatttttaatggaaatgcggaaataaggtttacagg 800

                                                                       
Query: 601 cctatatcgagaagtagtgcatatgaagcacagagcacacagaaacccacttacacgtga 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 801 cctatatcgagaagtagtgcatatgaagcacagagcacacagaaacccacttacatgtga 860

                                                                       
Query: 661 gcagacacactagaacccctcgcatgcaaaacacaggttttgtgaaactacgatggtaga 720
           ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 861 gcagacacagtagaacccctcgcatgcaaaacacaggctttgtgaaactacgatggtaga 920

                           
Query: 721 actcgtcactgtgtct 736
           ||||||||||||||||
Sbjct: 921 actcgtcactgtgtct 936


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 736
Length of database: 1136
Length adjustment: 10
Effective length of query: 726
Effective length of database: 1126
Effective search space:   817476
Effective search space used:   817476
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no146_e09.g1 MSMg01no146_e09.g1 CHROMAT_FILE:
MSMg01no146_e09.g1 PHD_FILE: MSMg01no146_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:51 2005
         (587 letters)



>mm_chr1_57059075_57060061
          Length = 987

 Score =  561 bits (290), Expect = e-164
 Identities = 308/314 (98%)
 Strand = Plus / Minus

                                                                       
Query: 274 aagctttcttctctctgatgactctagcttgtgtagagctgacaggattctcaccaatac 333
           |||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||
Sbjct: 987 aagctttcttctctctgatgactctagcttgtgtagagctgacaggaagctcgccaatac 928

                                                                       
Query: 334 agcagggtttccctggtagtctgtttcattccagccgttaggtttctgtcttggcttccc 393
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 927 agcagggtttccctggtagtctgttttattccagccgttaggtttctgtcttggcttccc 868

                                                                       
Query: 394 tagatgataaacttaagtcctttcctttcctccttaggttactttaggtctgtatttatc 453
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 tagatgataaacttaagtcctttcctttcctccttaggttactttaggtctgtatttatc 808

                                                                       
Query: 454 acagcaacagaaaacaactgctttcctatttttaagtatttacattttctatagaatatc 513
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 acagcaacagaaaacaactgctttcctatttttaagtatttacattttctatagaatatc 748

                                                                       
Query: 514 ttgtatttttaaagatttgcttatttttgttttatatgtttgactgaatgtacgtatgcg 573
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 747 ttgtatttttaaagatttgcttatttttgttttatatgtttgactgaatgtacgtacgca 688

                         
Query: 574 taccaagtgtgtgt 587
           ||||||||||||||
Sbjct: 687 taccaagtgtgtgt 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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