BAC Information

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BAC

Clone NameMSMg01-146E13
Chromosome1 (Build37)
Map Location 185,510,602 - 185,617,744
singlet/doubletdoublet
Overlap genenone
Upstream geneCapn8, 4922505E12Rik, Susd4, Tlr5, EG666649
Downstream gene1700056E22Rik, Dusp10, EG433387, EG629032, LOC666714, Hlx1, Mosc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146E13.T7 (MSMg01no146_e13.b1)MSMg01-146E13.TJ (MSMg01no146_e13.g1)
ACCAG349865AG349866
length1,2691,245
length of high quality
(start - end)
682 (82 - 763)374 (124 - 497)
definitionCHROMAT_FILE: MSMg01no146_e13.b1 PHD_FILE: MSMg01no146_e13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:52 2005CHROMAT_FILE: MSMg01no146_e13.g1 PHD_FILE: MSMg01no146_e13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(185,617,383 - 185,617,744)(185,510,602 - 185,510,972)
sequence
CCTTTTTTTTNNTCCATTGGCGCTAAGACTACTAAGGGAGAGGATCGCGG
AATTCCATCTGAGTGAATGGACCTTTAATGGGTCCATGTGCTTTGCTTTT
CTAACCTTCCACCTGTTCAGAAGTGCGGCCCCCCACATTTAAAGAAAAAA
TAAATCCCCTGTACATTTGTAAATAAAAAAGAAGACTGGGTAAATAAAGA
TTAAAATTAGCGTGACATTATCTTTAAGTAATATGATAAGGAAGGGAGTT
GGCTCAGTCAGTAAAGTGTCTGCCTACAAGCACAAGGACCGCCATTCAAT
CCCCAGAACCTACATTAAAAAAAAATACTAATAAAAGCAAGTGGAGTGTT
TGTAATCTCAACACTGGGAAGGCGGAGGCAAACACATCCCTAGGACTTGC
TGTTTATCAGCCTAGCAAGTTATAGACCAGTGAGAGACCTGGTCTCAAAG
AACTAGATGGATATAACCTGAGGAATGACAGCCAAGGCTGCCCTCTAGCC
TCCACATGCACATACAAGCACATAAACAAACATGCGAGCACACACACACA
CACATGCGCATATATACCCATGCACACACATGAACACACACACAAACATA
CATGCATATATGCATACATATCTGTGCATACAAATGTACACACACAAGCA
CACACATGAATGCATGCATACTCATGCACACACACATGTGCACACACATA
AACACACATGCACACATGCATACACACCCATGCACACATATGTGCACACA
CATGAGCACACACACAAGCAATAAAAGAAGAGTAGTAAATATAGATAATT
ACATATTAGCCTAACCGGTCTATAATGACTATTATTTTCTTCATATAAAA
AATATTATTAAATGAAAAATGTGGCAAAAAAGAAGCCTTCCTAAGTTTGC
ATAAAGACTTGCACAAAGTACCACGAGTGGTTTGTACTACCATCAGTTTT
TTTTCTCAGTTCTAAGGGTTACAAAGTTTGATACTATGTTTTTCTGGGGG
TATGGAAAAAATAAGTTTTTTGGTAACCTGGCCTTTTTTTTATGGTCAAA
ACTGGTAATGGAAAGAATAATTTGTCTCTCCCTTTGGTCAAAGGGACTCA
AAAGAGGGTGTATTCTTCCATGTTTATATTTTGTGCAAATAAAAATAAAC
TTCCTCTAAATACTCTTGTGAGCTGTTGTTTTTTTTTCTCTTAATGATAA
TAATAAAAACTTCTTCCTTATTGTCTCACGTTTTTTGTATGTATTATCAT
AATAATTTAATTTTGGTTT
CCTGTTTTTTTNNTTAGCATGGAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTATATTCCTCACAACTGGGT
GAGTCCATTCGCTATTGCCCACAACCTGGTGAATACCCCCCCCTAGTCCT
TACAACCTCTTAGGAACGTGCGCAGCATTTAGTTGATGGTAGCATTGAGC
TTCCGTAATGCCTGATACTTAGGGATTGAGACACAGGAAAATATCTATAG
GGCCCAATGGGCTGGTCATATTTCCTCTGCCTAGGTTGTGAGGAAATGGG
CACAGTGGTCAGGTTCTAACATATCCTTGGGCACTAGGCACTGCGTGGGA
GGGTGAAGACAAAAGAAGACTGAGACAGAGAGTCCAGGAAAGTTCATGTG
TGGCTTTTTGAGCCCAGGAAAAGTATTTTCAGAATGTGTTGGACTCGGTT
TATTTTTCTTAGTACTTGTGAGTGGAAAGGTGGGAGAGTAAATGTAGGGC
CTCTTCCATGCTGGGCATACACTGCACATATCTACTTGCTCATTCCATGT
TTGTGTTTTACAAGCTTTCTGAGGTAGGATCTCTTTGACTTCCAGATCTT
GTTTATTGATTTCTAATATTCTCTAAATAGATATTTTTGTTGTATTTCCT
TGTTCTATATTTTTATTATCTGATATTTTGCCTCTCTTTATTTTTTTTTT
TTGTTTTTGTTTTCTTTTCTCTTTTTTCTATCTTTTTTTTTCTTTTATTT
TTATTTCTTTAATTTTTCCTTATTTTATATTTTTTTTCTTTTTTTTTATT
TTTTTTTTCTTTTCTATCTTTCTATCCTTTTGTTTTCTATCTTCTCTTTT
TCTTTTCTCTTTTTTTTTTCTTTTTCCTTTCTATTTCTCTTTTCTCTTTT
TTCATTTTCCTTTTATTTTTTTTCTCTCTCTTCTCTTTTCTTTTTTTTTC
TGTCTTTCTTCTCTTTTTCTTCTCTCATTTTTTCTCTTTTTTTTTTCTAT
TTTATCTTTTTTTTTTTCTCTTTACTTCTCTCATCTTCTTATTTTCCTCT
ATTATTTCTCTCTTCAATTTTTTTTTATTTTTCTTTATTCCTCTCTTTTT
CTTTTTTCTCTTTTTCTATTTTTTCTTTTTTATTTTCTTTCTTCTTTTTT
TTTTTTTTTTCCTTCGTTTCCATTCATCTCATCCTTTTCTTTTTTTATTT
CTGCTTTTACTTTACTTCTTTTTCTTTTTCTCCTTCTTTTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_e13.b1 MSMg01no146_e13.b1 CHROMAT_FILE:
MSMg01no146_e13.b1 PHD_FILE: MSMg01no146_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:52 2005
         (682 letters)



>mm_chr1_185617383_185618464
          Length = 1082

 Score =  619 bits (320), Expect = 0.0
 Identities = 351/362 (96%), Gaps = 2/362 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtccatgtgctttgcttttctaaccttccacctgttcagaagtgcggccccccacattta 60
           |||||| ||||||||||||||||||||||||||| |||||||||||||| | || |||||
Sbjct: 362 gtccatatgctttgcttttctaaccttccacctgctcagaagtgcggcctctcagattta 303

                                                                       
Query: 61  aagaaaaaataaatcccctgtacatttgtaaataaaaaagaagactgggtaaataaagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 aagaaaaaataaatcccctgtacatttgtaaataaaaaagaagactgggtaaataaagat 243

                                                                       
Query: 121 taaaattagcgtgacattatctttaagtaatatgataaggaagggagttggctcagtcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 taaaattagcgtgacattatctttaagtaatatgataaggaagggagttggctcagtcag 183

                                                                       
Query: 181 taaagtgtctgcctacaagcacaaggaccgccattcaatccccagaacctacattaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 taaagtgtctgcctacaagcacaaggaccgccattcaatccccagaacctacattaaaaa 123

                                                                       
Query: 241 aa--aatactaataaaagcaagtggagtgtttgtaatctcaacactgggaaggcggaggc 298
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 aaataatactaataaaagcaagtggagtgtttgtaatctcaacactgggaaggcggaggc 63

                                                                       
Query: 299 aaacacatccctaggacttgctgtttatcagcctagcaagttatagaccagtgagagacc 358
           |||||||||||||||||||||||   | ||||||||||||||||||||||||||||||||
Sbjct: 62  aaacacatccctaggacttgctggccaccagcctagcaagttatagaccagtgagagacc 3

             
Query: 359 tg 360
           ||
Sbjct: 2   tg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no146_e13.g1 MSMg01no146_e13.g1 CHROMAT_FILE:
MSMg01no146_e13.g1 PHD_FILE: MSMg01no146_e13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:52 2005
         (374 letters)



>mm_chr1_185510402_185511173
          Length = 772

 Score =  617 bits (319), Expect = 0.0
 Identities = 359/377 (95%), Gaps = 10/377 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctggtgaataccccc----ccctagtccttacaacctcttaggaacgtgcgcagcatt 56
           ||||||||||||    |    ||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 acctggtgaata----catttccctagtccttacaacctcttaggaacgtgcacagcatt 256

                                                                       
Query: 57  tagttgatggtagcattgagcttccgtaatgcctgatacttagggattgagacacaggaa 116
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 257 tagttgatggtagcattgagcttccgtaatgcctgatacctagggattgagacacaggaa 316

                                                                       
Query: 117 aatatctatagggcccaatgggctggtcatatttcctctgcctaggttgtgaggaaatgg 176
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aatatc--tagggcccaatgggctggtcatatttcctctgcctaggttgtgaggaaatgg 374

                                                                       
Query: 177 gcacagtggtcaggttctaacatatccttgggcactaggcactgcgtgggagggtgaaga 236
           ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 375 gcacagtggtcaggttctaacttatccttgggcactgggcactgcgtgggagggtgaaga 434

                                                                       
Query: 237 caaaagaagactgagacagagagtccaggaaagttcatgtgtggctttttgagcccagga 296
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 435 caaaagaagactgagacagagagtccaggaaagttcatgtgtggcttcctgagcccagga 494

                                                                       
Query: 297 aaagtattttcagaatgtgttggactcggtttatttttcttagtacttgtgagtggaaag 356
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 495 aaagtattttcagaatgtgttggacttggtttatttttcttagtacttgtgagtggaaag 554

                            
Query: 357 gtgggagagtaaatgta 373
           ||||||||||| |||||
Sbjct: 555 gtgggagagtagatgta 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 772
Length adjustment: 9
Effective length of query: 365
Effective length of database: 763
Effective search space:   278495
Effective search space used:   278495
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)