Query= MSMg01no146_g22.b1 MSMg01no146_g22.b1 CHROMAT_FILE:
MSMg01no146_g22.b1 PHD_FILE: MSMg01no146_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:12 2005
(648 letters)
>mm_chr1_95997038_95998085
Length = 1048
Score = 830 bits (429), Expect = 0.0
Identities = 456/465 (98%)
Strand = Plus / Minus
Query: 1 tttaaattttaaagtgttgtgttcagaaattcctttcctgtgcaaatgactttaaagcta 60
|||| ||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||
Sbjct: 465 tttacattttaaagtgttgtgttcaggaattcttttcctgtgcaaatgaatttaaagcta 406
Query: 61 ttccccacttagaaactagcttttgaaaaaccatttgtgaagaactactgttttgaaaat 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ctccccacttagaaactagcttttgaaaaaccatttgtgaagaactactgttttgaaaat 346
Query: 121 aatgagacaaagctgaaagagccaaacaaaaacagcaatagacatcatctgattggtgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aatgagacaaagctgaaagagccaaacaaaaacagcaatagacatcatctgattggtgct 286
Query: 181 ggctgtggctaattttagaggaattttaatccagcaacaagaccgatttggcaaggaatc 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 285 ggctgtggctaattttagaggaattttaatccagcaacaagactgatttggcaaggaatc 226
Query: 241 acatccaaggaccttataggtttatgagatttggctggaatgcagataccctctgtatta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 acatccaaggaccttataggtttatgagatttggctggaatgcagataccctctgtatta 166
Query: 301 caggatgatctggctggactacatacgtgcccttagtattcaccaacaatccctaacaat 360
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 165 caggatgatctggctggactacatacttgcccttagtattcaccagcaatccctaacaat 106
Query: 361 gaagggaaggttaatttgtataaggaagcagtcgtgtttgaatgtgaaatctaattgaga 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 105 gaagggaaggttaatttgtataaggaagcagtcgtgtttgaatgtgaaatctaattgaaa 46
Query: 421 ggcagacaaagtgacaaattagagaaagatatgacagaaagaatc 465
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 ggcagacaaagtgacaaattagagaaagatatgacagaaagaatc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no146_g22.g1 MSMg01no146_g22.g1 CHROMAT_FILE:
MSMg01no146_g22.g1 PHD_FILE: MSMg01no146_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:12 2005
(696 letters)
>mm_chr1_95931299_95932394
Length = 1096
Score = 1301 bits (673), Expect = 0.0
Identities = 691/697 (99%), Gaps = 2/697 (0%)
Strand = Plus / Plus
Query: 1 tcttgaacccttaagaaatcgagagttcccctaccatacaaagaggcctcacccacatcc 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 tcttgaacccttaagaaatcgagagttcccctaatatacaaagaggcctcacccacatcc 260
Query: 61 gcccactgaccttgtatgactgagaaccaccaggactcagcctctagtcctcaccgtgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcccactgaccttgtatgactgagaaccaccaggactcagcctctagtcctcaccgtgga 320
Query: 121 cctaggtgccaattctgccttccacagctagagggcgagtttctagcagattccctgctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctaggtgccaattctgccttccacagctagagggcgagtttctagcagattccctgctg 380
Query: 181 catctccagcctcctccatccggcagggccagactgaaacagaagcctggttctcccctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 catctccagcctcctccatccggcagggccagactgaaacagaagcctggttctcccttc 440
Query: 241 cagaccagttaaggagggcattcgtacctgggagatggagaggagagagcaaagggaaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagaccagttaaggagggcattcgtacctgggagatggagaggagagagcaaagggaaga 500
Query: 301 aaccttttgggtgaggcgcagcatgggtgcttggtagctcggacgcctgggtcctgcgcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaccttttgggtgaggcgcagcatgggtgcttggtagctcggacgcctgggtcctgcgcc 560
Query: 361 cctgtggtcagctctggtttgtg-tgggagtagccacatcaagagctgcagcctctgcga 419
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 561 cctgtggtcagctctggtttgtggtgg-agtagccacatcaagagctgcagcctctgcga 619
Query: 420 gagattaaggacaccacagtgggaggggataggcgctgggtctcagccaggcggtgacac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gagattaaggacaccacagtgggaggggataggcgctgggtctcagccaggcggtgacac 679
Query: 480 ttgtgcctggggcagagcgagcggatggaaaaaatgagttcagggaggcgcagctgctgc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttgtgcctggggcagagcgagcggatggaaaaaatgagttcagggaggcgcagctgctgc 739
Query: 540 tttacgggaaagcggatgtgaagtgctgactggtccctgcggctctctctgttcttatct 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tttacgggaaagcggatgtgaagtgctgactggtccctgcggctctctctgttcttatct 799
Query: 600 gaacaggggctgccactaccggatggcttggcccagaagcgccttgcactcctgagccag 659
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 800 gaacaggggctgccactaccggatggcttggcccagaagcgccttgcacccctgagccag 859
Query: 660 gcgggaggttcagagacccgttgagagtatgaccact 696
|||||||||||||||||||||||||||||||||||||
Sbjct: 860 gcgggaggttcagagacccgttgagagtatgaccact 896
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space: 744996
Effective search space used: 744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
