Query= MSMg01no146_h01.b1 MSMg01no146_h01.b1 CHROMAT_FILE:
MSMg01no146_h01.b1 PHD_FILE: MSMg01no146_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:13 2005
(752 letters)
>mm_chr1_15839216_15840377
Length = 1162
Score = 1218 bits (630), Expect = 0.0
Identities = 732/787 (93%), Gaps = 37/787 (4%)
Strand = Plus / Plus
Query: 1 ccattgtgtattcccagatcattcctcacatgaattatttacca---ccttttaaagact 57
||||||||||||||||||||||||||||||||||||||||| | |||| ||||||
Sbjct: 178 ccattgtgtattcccagatcattcctcacatgaattatttattattt--tttttaagact 235
Query: 58 cctg----------------------attccgtgttccccagccatcctccatcaagatt 95
|||| |||||||||||| |||||||||||||||||| ||
Sbjct: 236 cctgaatggcacttaatgaagggctcattccgtgttcctcagccatcctccatcaaggtt 295
Query: 96 ttactccgaagctgttaggtacctgtttggggag-------tcttcctcacctccttctg 148
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 296 ttactccgcagctgttaggtacctgtttggggagtcttccttcttcctcacctccttctg 355
Query: 149 aatagcctacttatgtcttctccattctgtggccacttaaccttggctgaagtcatcaca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 356 aatagcctacttatgtcttctccattctgtggccacttaaccttggctgaagtgatcaca 415
Query: 209 actctcctactcctacatgactcctcactccctctcct--t-gactttattccgtttaat 265
|||||||||||||| ||||||||||||||||||||||| | ||||||||||| ||||||
Sbjct: 416 actctcctactcctgcatgactcctcactccctctcctcctcgactttattccatttaat 475
Query: 266 tcttgctgtatttgtttattctgcaggccagttagcctcaaacttcattctctggagtac 325
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 476 tcttgctgtatttgtttattctgcaggccagttagcctcaaacttcagactctggagtac 535
Query: 326 cagggttacaaatgtaagtagcacactaggcgggcccgtccctttaattggttcgttgac 385
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 536 cagggttacaaatgtaagtagcacactaggcaggcccgtccctttaattggttcgttgac 595
Query: 386 attgacagtttattggttgactgagttggttttagtttaccattcagtctaacaatcttt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 attgacagtttattggttgactgagttggttttagtttaccattcagtctaacaatcttt 655
Query: 446 tgagtatttttgattctttacatataggttgatgctgaacaaaataaaactagccagaaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 tgagtatttttgattctttacatataggttgatgctgaacaaaataaaactagccagaaa 715
Query: 506 ccagaatggtggctctctccttataaccagatctgaagcaagggagccagcttgtgctgc 565
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 ccaaaatggtggctctctccttataaccagatctgaagcaagggagccagcttgtgctgc 775
Query: 566 agtgtaaggcctgcctcagcacagtgatagagagatgactcagaagttaaaagctctagc 625
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 agtgtaaggcctgtctcagaacagtgatagagagatgactcagaagttaaaagctctagc 835
Query: 626 tttgtttccccccagaggactcatacttgattcccaggatccacatggtgtctaacaacc 685
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 836 tttgtttccccccagaggacccatacttgattcccaggatccacgtggtgtctaacaacc 895
Query: 686 gtctataacttcagttctagagtatctgaccatcttctgacgtttgtggncactgtgtgc 745
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 896 gtctataacttcagttctagagtatctgaccatcttctgacgtttgtggccactgtgtgc 955
Query: 746 acatggt 752
|||||||
Sbjct: 956 acatggt 962
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 752
Length of database: 1162
Length adjustment: 10
Effective length of query: 742
Effective length of database: 1152
Effective search space: 854784
Effective search space used: 854784
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no146_h01.g1 MSMg01no146_h01.g1 CHROMAT_FILE:
MSMg01no146_h01.g1 PHD_FILE: MSMg01no146_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:13 2005
(637 letters)
>mm_chr1_15914267_15915305
Length = 1039
Score = 1091 bits (564), Expect = 0.0
Identities = 613/634 (96%), Gaps = 9/634 (1%)
Strand = Plus / Minus
Query: 2 atgaacgacttcaggtgctctagggccttgtgtctgagatggacccggagcctaagcctg 61
||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||
Sbjct: 692 atgaacgacttcaggtgctctagggacttgtgtctgagatggaacaggagcctaagcctg 633
Query: 62 cagtgctaagcttatggggcaaatcgctaatgtgggactagccaaaagcaccttctagcc 121
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 632 cagtgctaagcttatggggcaaagcgctaatgtgggactagccaaaagcaccttctagcc 573
Query: 122 ctcagaggctgagggctagggatacagggcaccaccaagaaggggatattttcctaccat 181
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 572 ctcagaggctgagggctagggatacagggcaccgccaagaaggggatattttcctaccat 513
Query: 182 cgatctgatatcaattcttcaataattgttttgagaaaaatcacaacatacctgctcttc 241
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 512 cgatctgatatcaattcttcaataattgttttgagaaaaatcacaacacgcctgctctcc 453
Query: 242 ttccagcaagaagcatcttccattaccagacagaagacaacaaacaaaccaaccccaaac 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ttccagcaagaagcatcttccattaccagacagaagacaacaaacaaaccaaccccaaac 393
Query: 302 ctctggtgcactcatatgtaaaacagaccctatcagatggctgaggattcaatattactg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ctctggtgcactcatatgtaaaacagaccctatcagatggctgaggattcaatattactg 333
Query: 362 aaagtttgggtcacttatgaagttgctagtaggtctgagagagagaga--aggacttgct 419
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 332 aaagtttgggtcacttatgaagttgttagtaggtctgagagagagagagaaggacttgct 273
Query: 420 gccttgctgatggggtaagtggctccacctgttcatctcaggtaacggttctgtgttcag 479
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 272 gccttgctgatggggtaagtggctccacctgttcatctcaggtaatggttctgtgttcag 213
Query: 480 aggagtccctcgtccctcatcaagggcatgcccttgtctctcagacatcaaggttatctc 539
||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 aggagtccctc-------atcaagggcatgcccttgtctctcagacatcaaggttatctc 160
Query: 540 ctgctaatgatttagtgtttcctacttatttttatctttaaaaaatacttcaaagtgtgt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 ctgctaatgatttagtgtttcctacttatttttatctttaaaaaatacttcaaagtgtgt 100
Query: 600 gtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgt 633
||||||||||| |||||||||| |||||||||||
Sbjct: 99 gtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgt 66
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1039
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1029
Effective search space: 645183
Effective search space used: 645183
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
