BAC Information

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BAC

Clone NameMSMg01-146M13
Chromosome1 (Build37)
Map Location 32,173,144 - 32,173,839
singlet/doubletsinglet
Overlap genenone
Upstream gene4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262, LOC624275, LOC666056, LOC100041238
Downstream geneKhdrbs2, EG408191, EG633498, LOC213711
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146M13.T7 (MSMg01no146_m13.b1)MSMg01-146M13.TJ (MSMg01no146_m13.g1)
ACCAG350228AG350229
length1,2661,233
length of high quality
(start - end)
735 (88 - 822)600 (87 - 686)
definitionCHROMAT_FILE: MSMg01no146_m13.b1 PHD_FILE: MSMg01no146_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:58 2005CHROMAT_FILE: MSMg01no146_m13.g1 PHD_FILE: MSMg01no146_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCATTTTTANTTNNTTACATTGGGCGCTATAGACTCCTATAGGGAGAGGA
TCCGCGGAATTCTGTTAAGTTTAGAGACCCTTTAGAGAGAAGAATTTAAC
ATCAAATGTGTGAGAGGAACCTTAGAATATATATATATACCCCTCTCTAC
CACAGTGAAAGAATAGGAGACCATGTGTTGAGAATAAAAGAGATGTGGTC
ACTGTATTAAAGAAAGTCACAGAAATTCTTAGGATGCAGCATTGACTAGG
AAATCTGTAGGAGAACCTCACAAAAGAAATCCTAATTTCTATTAGGATTG
AATGGCAACCCTAATAGAAATCATGCAGAAACAGTAATTGCCTTTATTCT
TAGTGTTTGTGTGGGACCAACATCTGCCTTTCTGAAACTAGGTTTGTCTC
ACTGAAAATATATATGTACATGTCTGTATTGTATTATTAAAATTGGTTCT
GCTGTCCTCCTCAGTCTACTGGACAGCTTTCATGTATTTGTAGGTGATGG
AGTTTTGTGAATGCTACATGTGTGTAACACAATTAGCACAAAGTGAATAC
AGCATAGAGTGTAGTTACTACTAAACAATGAATTATGTGAAATGTTGGTG
AATTTCTGGAACTTTACAGATATTTAAATGAGATTAGAAAAAAATTTTGC
AGATAATTAAAAATATATCAAAGGTGGTAAAATAACATCTGAGCAGAGAA
GATGAAATCGAGAACCCCTTTGGTTAATTAAACCTTGCTGTGATGTTTAG
AATTCACTTGGTACTCGTACCCCTATGCACCTTTACTGTGTGCACAGACT
CACTTAATATTTATTATTTGTCAGATAAAAATGTTGATTTTTGAAACCCC
CAAACTCCTCTAATTAAAAAGAAACAGATGTGTTTGTAACTAATGTCTCA
TCCCCAAAGTCCCCAATTAAGAGACATGAATTGATTTTTATGCAAATAGT
TATTGTATATTATTGGTTTTGGAACACTGGAAATTTATCCCCCCAAGGGG
TGTTTTGTCTTCATTTTTTTTAAAAATTTATTATGGTTTTTCCTCTTTTG
TCTCTAAAAAAGGGTATGTTTGTTTATATTATCTTAGTCTCTAATTGTTT
ATAAATTTTGGTGTTAATTTTAGTATTTTTTCCCTTTTCTTATATCGTAG
GTTTTATTCTCTTTCTGTATTTTTTCTTGCTGATTAATTAACTTTCTTAT
TCTCTTAATTTATGTTATGTTTTCATATACTCAATTATCTTCTTCTTGCT
ATCTCTTACTTCTTTA
CCCTTTTTTTTTTTAAGATGTGTAGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAGTTTAGCTCTGTTCCCCAT
TTTTAAATAGGGTTACTTTGTTCTCTGGAGTCTACCCCCTTTATTTCTTT
GTATATATTGTATATTATCTCTCCACTAGATGTAGGGATGATAAAGTGTT
GCTAGCCGTCCAGCGGCTCACATGGATGGGGTACACCTGAGTGGCAGGCC
GGCACTGAAAGAAAGGGAAACTAGGCAAACGAGAGAGAAATGGAGCCAAG
ACAGTGTTCTGATCAAGGATCAAATATTTAATAGCGAATGCACTTATAAA
GGGGGGGCATTCCCGCCAATTCATCTTTGGAGCCTGGAACCAGCTGCAGG
TGATGATGTGCAGGATAGGGCATAGTCTCCAGAATAGCTCTGGGACCTGT
CAGCAGGTAGCAGTATCTTGAAGAGAAACAGCGACAGTGGCTGAACAATA
GAGTGATCTAGGGAGGAAGGCTCCACCATAGGTAATCTCCTTAGTGGTAG
CAAGGTCAAGTTCTGGCTCAGCAAGCTTCAGGCTGAGGGAAGGTTACAAT
TTCCTCCCTGTTATTAATATTAAAATAATAAGCTGGACTGAGGCACAACA
TTTACTTATGTGCCATAGTCCTGCCTGTGAATTATGGTGGCTGGTGGCCG
TGCTTGTCTTAGGAAATCTTAGATCTTTCCCTAAAATCCAATTCTGTCTT
ATAGGCTATGTGCAGCTTAGTTGTGTTATTTTTTTCACAAATGTGGTTTC
TGTGTGTGTTATTAATCGCTACGGTCCTTTGATATGTACCTCTGTATTAT
ATTTGTTTGCTCTTTTTATTTGATGTCTTTTTATTGACTGTTTGGTTCTT
TAAACCTCTTTATATTCTCATTTCAAATTCTATTTTTTTATGTTTAATAA
TTTTTTCTTTTGTTTATTTTCTTTTTCTCTTTCTTTCATTTTTATTATTT
TTTTTACTCTTCCTTACCTTTTTTTAATTTTTTTTATTCTTTTTTTTTTT
TCTATTTTTTTTTTATTCTTTTTTTTATCTCTACATTTTATTTTTTTTTT
TTATTTTTTCTTATTTTTTTTTTTTTTTTTAATTTTATTCTTTTATTCTA
TTTATTTTATTTTTTCTCCTTTTTTTATGTTTTTTTTATCTCTCATTATT
TTTATTATCTATTGTATATTTTATTTTTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_m13.b1 MSMg01no146_m13.b1 CHROMAT_FILE:
MSMg01no146_m13.b1 PHD_FILE: MSMg01no146_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:58 2005
         (735 letters)



>mm_chr1_32172905_32174039
          Length = 1135

 Score = 1284 bits (664), Expect = 0.0
 Identities = 688/696 (98%)
 Strand = Plus / Minus

                                                                       
Query: 40  atatatatatatacccctctctaccacagtgaaagaataggagaccatgtgttgagaata 99
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 atatatatatatacacatctctaccacagtgaaagaataggagaccatgtgttgagaata 876

                                                                       
Query: 100 aaagagatgtggtcactgtattaaagaaagtcacagaaattcttaggatgcagcattgac 159
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 aaagagatgtggtcactgtattaaagaaagtcacagaaattcttaggatgcagcattgac 816

                                                                       
Query: 160 taggaaatctgtaggagaacctcacaaaagaaatcctaatttctattaggattgaatggc 219
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 815 taggaaatctgtaggagaacctcacaaaagaaatcctaatttctattaggattgaatagc 756

                                                                       
Query: 220 aaccctaatagaaatcatgcagaaacagtaattgcctttattcttagtgtttgtgtggga 279
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 aaccctaatagaaatcatgcagaaacagtaattgcctttattcttagtgtttgtgtggga 696

                                                                       
Query: 280 ccaacatctgcctttctgaaactaggtttgtctcactgaaaatatatatgtacatgtctg 339
           |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 695 ccaacatctgcctttctgaaactaggtttgtctcactgaaaatagagatgtacatgtctg 636

                                                                       
Query: 340 tattgtattattaaaattggttctgctgtcctcctcagtctactggacagctttcatgta 399
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tattgaattattaaaattggttctgctgtcctcctcagtctactggacagctttcatgta 576

                                                                       
Query: 400 tttgtaggtgatggagttttgtgaatgctacatgtgtgtaacacaattagcacaaagtga 459
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tttgtaggtgatggagttttgtgaatgctacatgtgtgtaacacaattagcacaaagtga 516

                                                                       
Query: 460 atacagcatagagtgtagttactactaaacaatgaattatgtgaaatgttggtgaatttc 519
           |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 515 atacagcatagagtgtagttactactaaccagtgaattatgtgaaatgttggtgaatttc 456

                                                                       
Query: 520 tggaactttacagatatttaaatgagattagaaaaaaattttgcagataattaaaaatat 579
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tggaactttacagatatttaaatgagattagaaaaaaattttgcagataattaaaaatat 396

                                                                       
Query: 580 atcaaaggtggtaaaataacatctgagcagagaagatgaaatcgagaacccctttggtta 639
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 atcaaaggtggtaaaataacatctgagcagagaagatgaaatcgagaacccctttggtta 336

                                                                       
Query: 640 attaaaccttgctgtgatgtttagaattcacttggtactcgtacccctatgcacctttac 699
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 attaaaccttgctgtgatgtttagaattcacttggtactcgtacccctatgcacctttac 276

                                               
Query: 700 tgtgtgcacagactcacttaatatttattatttgtc 735
           ||||||||||||||||||||||||||||||||||||
Sbjct: 275 tgtgtgcacagactcacttaatatttattatttgtc 240


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 735
Length of database: 1135
Length adjustment: 10
Effective length of query: 725
Effective length of database: 1125
Effective search space:   815625
Effective search space used:   815625
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)