Query= MSMg01no147_h06.b1 MSMg01no147_h06.b1 CHROMAT_FILE:
MSMg01no147_h06.b1 PHD_FILE: MSMg01no147_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:03 2005
(573 letters)
>mm_chr1_20358486_20359459
Length = 974
Score = 1009 bits (522), Expect = 0.0
Identities = 558/570 (97%), Gaps = 1/570 (0%)
Strand = Plus / Minus
Query: 5 gaattctttgtagag-caccaattggaagtaagagaaagggctgagcagtaacgtgggct 63
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gaattctttgtagagtaaccaattggaagtaagagaaagggctgagcagtaacgtgggct 620
Query: 64 ggctgctgatttacttcttttataagaaaagtgagtcttactggctaacataggaccaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ggctgctgatttacttcttttataagaaaagtgagtcttactggctaacataggaccaaa 560
Query: 124 ggtgtaatatttctacgaactataaatgtacttggtgagtgtttatatgtgatcactcac 183
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ggtgtaatattcctacgaactataaatgtacttggtgagtgtttatatgtgatcactcac 500
Query: 184 atgttgcataaatatcaatggcactgaggcaggttgattcaagaaatactctcacctgtt 243
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 499 atgttgcataaatatcaatggcactgaggcaggttgattcaacaaatactctcacctgtt 440
Query: 244 caaaatgcttgcagcacactggtgctggcagtgataatgaaagaggattatggaatatct 303
||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 439 caaaatgcttgcagcccactggtgctggcagcggtaatgaaagaggattatggaatatct 380
Query: 304 ttctgaactttcagaacattcctcctcatgaagtcttggtgatgagcttgcatacattgg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttctgaactttcagaacattcctcctcatgaagtcttggtgatgagcttgcatacattgg 320
Query: 364 taataaataacgcatatattaaactgagactggcattgtcagcctctggtgtatattctc 423
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 taataaataatgcatatattaaactgagactggcattgtcagcctctggtgtatattctc 260
Query: 424 attatttgtgcacttgtagaaaaggtaagtgtttaagagtgaacagcgcgtgtgtgtact 483
|||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct: 259 attatttgtgcacttgtagaaaaggtaagtgtttaagagtaaacagtgtgtgtgtgtact 200
Query: 484 acattgaaaagaatggagagattgacaccttgtctcatctctaatcctagaggaaatgct 543
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 atattgaaaagaatggagagattgacaccttgtctcatctctaatcctagaggaaatgct 140
Query: 544 ttcagtttttcctcatttaatataacattg 573
||||||||||||||||||||||||||||||
Sbjct: 139 ttcagtttttcctcatttaatataacattg 110
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 974
Length adjustment: 10
Effective length of query: 563
Effective length of database: 964
Effective search space: 542732
Effective search space used: 542732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_h06.g1 MSMg01no147_h06.g1 CHROMAT_FILE:
MSMg01no147_h06.g1 PHD_FILE: MSMg01no147_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:03 2005
(501 letters)
>mm_chr1_20227483_20228383
Length = 901
Score = 866 bits (448), Expect = 0.0
Identities = 491/512 (95%), Gaps = 11/512 (2%)
Strand = Plus / Plus
Query: 1 cacactgttaggatttggattaaacggcatcactgaacagatatgctctg---------- 50
|||||||||||||||||||| ||| ||||| |||||||||||||||||||
Sbjct: 190 cacactgttaggatttggatgaaatggcattactgaacagatatgctctggcagtatgct 249
Query: 51 -catcaatgtccacatctattaagtttgtttactaactagtttgtttattatctctctca 109
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gcatcaatgtccacatctattaagtttgtttactaactagtttgtttattatctctctca 309
Query: 110 tgttgggatttctgtaggtatggacagatgggttgaaagtcttccttcaggcataacaca 169
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tgttgggatttctgtaggtgtggacagatgggttgaaagtcttccttcaggcataacaca 369
Query: 170 cataggactgggcagatgggttccaataagcaacctttaggcctggaacacatggttgag 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 370 cataggactgggcagatgggttccaataagcaacctttaggcctggaacacatgggtgag 429
Query: 230 aggaaaagagacacaccattatctagtgatgggtaaaatcaagttagaaatagacataat 289
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aggaaaagagacacactattatctagtgatgggtaaaatcaagttagaaatagacataat 489
Query: 290 ttaaaatctaaaatatcaaaagcaaaactggaggctggaacattgctgttttctttcaat 349
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 490 ttaaaatctaaaatatcaaaagcaaaactggaggctggcacattgctgttttctttcaat 549
Query: 350 ggtgtaaatctcagcctgctagttattggttataattgaccccagaagcctggaaagaag 409
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 550 ggtgtaaatctcagcctggtagttattggttataagtgaccccagaagcctggaaagaag 609
Query: 410 atctctggtcataagatgatggcttcaaacacttttttactgacacaagcacatttcatt 469
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 atctctggtcataagaagatggcttcaaacacttttttactgacacaagcacatttcatt 669
Query: 470 tcattaaatatttccatcagtgattagatgag 501
||||||||||||||||||||||||||||||||
Sbjct: 670 tcattaaatatttccatcagtgattagatgag 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
