BAC Information

Click to search

BAC

Clone NameMSMg01-147K11
Chromosome1 (Build37)
Map Location 65,987,571 - 65,988,008
singlet/doubletsinglet
Overlap genenone
Upstream gene9430067K14Rik, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775, Crygf
Downstream geneLOC667781, EG667786, Mtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147K11.T7 (MSMg01no147_k11.b1)MSMg01-147K11.TJ (MSMg01no147_k11.g1)
ACCAG350873AG350874
length706693
length of high quality
(start - end)
427 (85 - 511)438 (71 - 508)
definitionCHROMAT_FILE: MSMg01no147_k11.b1 PHD_FILE: MSMg01no147_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:17 2005CHROMAT_FILE: MSMg01no147_k11.g1 PHD_FILE: MSMg01no147_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCNCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAACA
CGGACCGCGGAATTCTTTATATCCGCCACCCGAATAAAAAGTGCTTGCTA
TCTCCTAAGAATCAGCAGGTTGGGGGTAATGAAAAGTTGATTCAGAGAAT
AATCAAAAGAGAAACTGGAGTAAATGACTAGATTGATATGTAAAATAAAA
GACTGGGCTTATGGTCTGCAAGAGATGAGCTATCTAGAACATTTTTTAGA
ATAGCAACAATACTTGGCTAACTGCCTCGAGCAGAAAATAGAGACAGAGA
TGCCTGGAGATCTCCAGAGAAAGCAAAGCATATAGAAAGTGTTAGGGTTC
AAGAATGGCCAAAGAATGATACCCCAGACTCAAATAGTATGTAAAAGCAA
AGCGCATTTATTTAACTGAATATCCTGCCTGCAGGGAATGCATTTGGGAA
AGGAAACCTCCACTGGACTGGAACACCCAGGTTTTATTGCCAGTTTGTCG
AATTCCAGGGATAGGTCCTGTGCCGTTTTACCTTGATTGGTTAGCTCTAT
CTCTAGGGGTCTGACTGATCCTATAACTGGTTAGGGCTCTGGAAATATCC
CAGAGAAGGGGGAATGCCTATTTGTTCTAGCTCTCTATTCCTACCTCCTG
CCAGATAACAAAGTTGGACTACCCCAGGTTTTCTGGATCCTGGCCTCCCA
TTTCCA
ATAACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTTGGAATATTTTTAAGGATTCCCCTGCC
CCCAAAATTTGTCATTCCTGTTTCAAAAGTGATGGGGATGACACAGAGAT
TTAAATATTTCCTTCCTCATGTACGAGGAAGGAAATATTTAAATCTAAAA
CTAATTCCCACTTAAAATTTGTTTTAATAGTGCACTTCAGTTGATAAATC
TTAAAGCATTTTTGATTGTGAATTAAGCATCTCTAATATCTCTGGCATCT
ATACAGTATAAGGAAAAGCTAAGAGACTCCATTTGTGATTTCTGATAATA
TGAATTACATTCATTAATTTAAAGCACTAAACTTTCACTTAGACTGAAAT
TACAGCTTCAATTTACCACAGAGATTTTGTACACAAATGAAGAGATTGTG
TTAAGTGATGCATAACCAAGAGATGATTTGTGGAAAGAAATGGCTGCTTC
TTGATTAATCAAGTAAGCTCATCTCCATGCCAGGAGTTACAGGACTTGAA
AAATTGAGCAATTCAGAGTAACAATTAAAACTCAAAAATATGAGGCAAAT
AATGGAATTAAAAATTCGGCAAGATATATTAATGGATATTTCCTACAAAC
CCATATAAATGGCCAATATGCAATGGAAAAGATGCTCCACATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_k11.g1 MSMg01no147_k11.g1 CHROMAT_FILE:
MSMg01no147_k11.g1 PHD_FILE: MSMg01no147_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:17 2005
         (438 letters)



>mm_chr1_65987371_65988208
          Length = 838

 Score =  847 bits (438), Expect = 0.0
 Identities = 438/438 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttggaatatttttaaggattcccctgcccccaaaatttgtcattcctgtttcaaaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttggaatatttttaaggattcccctgcccccaaaatttgtcattcctgtttcaaaagt 260

                                                                       
Query: 61  gatggggatgacacagagatttaaatatttccttcctcatgtacgaggaaggaaatattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatggggatgacacagagatttaaatatttccttcctcatgtacgaggaaggaaatattt 320

                                                                       
Query: 121 aaatctaaaactaattcccacttaaaatttgttttaatagtgcacttcagttgataaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatctaaaactaattcccacttaaaatttgttttaatagtgcacttcagttgataaatc 380

                                                                       
Query: 181 ttaaagcatttttgattgtgaattaagcatctctaatatctctggcatctatacagtata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaaagcatttttgattgtgaattaagcatctctaatatctctggcatctatacagtata 440

                                                                       
Query: 241 aggaaaagctaagagactccatttgtgatttctgataatatgaattacattcattaattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggaaaagctaagagactccatttgtgatttctgataatatgaattacattcattaattt 500

                                                                       
Query: 301 aaagcactaaactttcacttagactgaaattacagcttcaatttaccacagagattttgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagcactaaactttcacttagactgaaattacagcttcaatttaccacagagattttgt 560

                                                                       
Query: 361 acacaaatgaagagattgtgttaagtgatgcataaccaagagatgatttgtggaaagaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acacaaatgaagagattgtgttaagtgatgcataaccaagagatgatttgtggaaagaaa 620

                             
Query: 421 tggctgcttcttgattaa 438
           ||||||||||||||||||
Sbjct: 621 tggctgcttcttgattaa 638


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)