Query= MSMg01no148_a10.b1 MSMg01no148_a10.b1 CHROMAT_FILE:
MSMg01no148_a10.b1 PHD_FILE: MSMg01no148_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:47 2005
(667 letters)
>mm_chr1_16111076_16112142
Length = 1067
Score = 986 bits (510), Expect = 0.0
Identities = 523/528 (99%), Gaps = 2/528 (0%)
Strand = Plus / Minus
Query: 5 gaattctatgaattttacagacttgaaggtatctgcttaataaatagaatgatcaaactt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gaattctatgaattttacagacttgaaggtatctgcttaataaatagaatgatcaaactt 474
Query: 65 tataactttggccatagacaagtgttacttgataaaagcaatttttattacaaaaatacc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tataactttggccatagacaagtgttacttgataaaagcaatttttattacaaaaatacc 414
Query: 125 tttcattgagagataaaatatatttgctaggaatttactgattaattcttttaaatgcag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tttcattgagagataaaatatatttgctaggaatttactgattaattcttttaaatgcag 354
Query: 185 ttgacagaccctgctgttcatgtacctgcatgagagtctgtgttccctgtcctaattgtt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ttgacagaccctgctgttcatgtacctgcatgagagtctgtgttccctgtcctaattgtt 294
Query: 245 agaggcagaaaggtctctgaataattatgcaaggcactagagcctggaagtactattctc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 agaggcagaaaggtctctgaataattatgcaaggcactagagcctggaagtactattctc 234
Query: 305 ttagccttaacaaaatatacttttttttt--ctttttttgtttttgagacagggtttctt 362
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 233 ttagccttaacaaaatatactttttttttttctttttttgtttttgagacagggtttctt 174
Query: 363 tgtatagccctggctgtcctggaactcactctgtagaccaggctggcctaaaattcagaa 422
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 tgtatagccctggctctcctggaactcactctgtagaccaggctggcctaaaattcagaa 114
Query: 423 atacgcctgcttctgcctcccaagtgctgggattaaaggcgtgtgccaccactgcccagg 482
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 113 atacgcctgcttctgcctcccaagtgctgggattaaaggtgtgtgccaccactgcccggg 54
Query: 483 caaaatgtacatcttaatttccattaaactgagacacaacgtttgctt 530
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 caaaatgtacatcttaatttccattaaactgagacacaacgtttgctt 6
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no148_a10.g1 MSMg01no148_a10.g1 CHROMAT_FILE:
MSMg01no148_a10.g1 PHD_FILE: MSMg01no148_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:48 2005
(644 letters)
>mm_chr1_15972672_15973715
Length = 1044
Score = 1230 bits (636), Expect = 0.0
Identities = 642/644 (99%)
Strand = Plus / Plus
Query: 1 attaaaccactattgttactgcaccataggtgcagtaaatattcacttttatccatgatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaaaccactattgttactgcaccataggtgcagtaaatattcacttttatccatgatt 260
Query: 61 tcctctggactctccagtgagtatgaggtgtgtggccaggctagtcaaaatagcccttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctctggactctccagtgagtatgaggtgtgtggccaggctagtcaaaatagcccttct 320
Query: 121 cccttaacacagtggtaatttagtgggggacttttgctcctggcaaagtctttcagagtc 180
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctaaacacagtggtaatctagtgggggacttttgctcctggcaaagtctttcagagtc 380
Query: 181 taatttgaaggaataatctggggaaaagatctcttcttctgagatagtgagcattattaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatttgaaggaataatctggggaaaagatctcttcttctgagatagtgagcattattaa 440
Query: 241 ctacagaaagtgttatttctctatataaacagaggtaaaaagccagcacagaaggaaaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctacagaaagtgttatttctctatataaacagaggtaaaaagccagcacagaaggaaaac 500
Query: 301 ggagttgagaaggccacctatcagcctgtagacagagtcattcctgaagcctaaaatgca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggagttgagaaggccacctatcagcctgtagacagagtcattcctgaagcctaaaatgca 560
Query: 361 ccaataaattcttcgttttgcctatgctagcttgaattgattttatatctctaaacataa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaataaattcttcgttttgcctatgctagcttgaattgattttatatctctaaacataa 620
Query: 421 tgttttaccataaaaacacttcctatggcagagggattccagaactctcatatgtggaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgttttaccataaaaacacttcctatggcagagggattccagaactctcatatgtggaga 680
Query: 481 ctttgatccaaaacagcctgctcatccatccctctcctggtatttattttccattcctgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctttgatccaaaacagcctgctcatccatccctctcctggtatttattttccattcctgt 740
Query: 541 ccatcccaggggtaccaggagcagggattattgctgcaaccactcactctgggtataact 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccatcccaggggtaccaggagcagggattattgctgcaaccactcactctgggtataact 800
Query: 601 cagacttctttttttggcattcactgactctgctctcattgatc 644
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cagacttctttttttggcattcactgactctgctctcattgatc 844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
