BAC Information

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BAC

Clone NameMSMg01-148B15
Chromosome1 (Build37)
Map Location 94,682,009 - 94,682,637
singlet/doubletsinglet
Overlap genenone
Upstream geneTwist2, Hdac4, LOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos
Downstream geneGpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148B15.T7 (MSMg01no148_b15.b1)MSMg01-148B15.TJ (MSMg01no148_b15.g1)
ACCAG351199AG351200
length738733
length of high quality
(start - end)
621 (69 - 689)618 (68 - 685)
definitionCHROMAT_FILE: MSMg01no148_b15.b1 PHD_FILE: MSMg01no148_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:53 2005CHROMAT_FILE: MSMg01no148_b15.g1 PHD_FILE: MSMg01no148_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAAGGCGCGGA
ATTCAAGTCCTTACTACCGAAGAAAAGCAGCCAAGGAGATAGCTCTGTCC
ATTAAGTCCTTGCCTTGTTTCCTCAGACACCACCCCCAAATCTGGGCATG
ATGATGCACATCTGTAATCCTAGCACTGTCAATGTGGAAATAGGTGGATT
CTCGGGGCTCACTAACCAATGAGATACTCTGACAAAACAAACAAACAAAC
AAACAAAAACCAGCTATGGCTGGAGAGATGACTCAGCTCAGTTGATAAAG
TGAATGTCAAGCAATCATGAGAACCTGAGTTCAGATTCCCAGCACTCACA
GGAAAAGCCAGGCACGGTGGTGCATGCTTGTAATCCAGGCACTGAAGAAT
CTGAGATGAGAGGACTCCCGACCTCACTGGACAGTTAGTCTTGCAGAATT
CGTGCGCTCCAGGATCATTAAGAGACACTATCTAAAAACATGGTGAGGAG
CAATTGGGAAGATACTCAAGGCTGGCCTCTAGCCTACACAGAGAGAGGGG
GCAGGAGGTAGAGATAGCCTCTTTGCCCCTTACACAATGACACATCACCT
ATGGAAAAGTTGGCCCTCAATGTCATAGAAAATGCAGCATCTGCTTCTGC
CTTGGTTGGATTTCAGGGTCAAAGAAGGTTATAATGTTCATGAGCTATTC
GGTCTGTGGGATTGGGTACGACAGCCAGAACAGGCTAA
ATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGGGGATTGACTGAACCTAGGTTGCCTGCTTTA
CATAGCAAGCAATTTACCTGCTGAGCCACCTGGCCTGCCAAGACAGCTGA
TTTTTGACAAAGGTGCTCAAAACATATGCTGGAAAAGACAGCCTTTCATC
AAATGGATATCCATATGTAAGAGAATGAAATTAGATCACTCTCTCTTGCC
TTTTCAAACACCAAAATGGATCAAAGACTTAAATATAAAACTTGGAACTT
TTATACTGCTAGGGGGAAAAAAAAACCCTTCAAGATATATGTACAGGCAA
AAAACAAAAAACAAAACAAAACAAAAACCCCAAAAACAAAAACAAAAAAC
AAAACAACTTTCTGAAAAAAGATGCCAATGGCCCATGAAACAACAAGAAT
GAGAGATGGACTTGAACAAAATTAAAAAGCTTTTGTATAGCAAAGGAAAC
AGTGTGAAGAGATAGTTTAGAGCAGAAAAAAAAAAGGTTTTGCCAACTGT
ACATGCATAAGATATTATTATCTAGCATCTATAAAGAAACCTGTGGTGAT
TTGAATATGCTTGGCCCAGGGAGTGGCATTATTAGGAGGTGTGGCCTTGT
TGATGAAGGTGTGGCCTTGTTGGAGGAAGTGTGTCACTGTGGGGGTGGGC
TTTGAGGCTCCTATGCTCAGGCTCTGCTCAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_b15.b1 MSMg01no148_b15.b1 CHROMAT_FILE:
MSMg01no148_b15.b1 PHD_FILE: MSMg01no148_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:53 2005
         (621 letters)



>mm_chr1_94681817_94682837
          Length = 1021

 Score = 1062 bits (549), Expect = 0.0
 Identities = 603/641 (94%), Gaps = 32/641 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaagaaaagcagccaaggagatagctctgtccattaagtccttgccttgtttcctcagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gaagaaaagcagccaaggagatagctctgtccattaagtccttgccttgtttcctcagac 252

                                                                       
Query: 61  accacccccaaatctgggcatgatgatgcacatctgtaatcctagcactgtcaatgtgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 accacccccaaatctgggcatgatgatgcacatctgtaatcctagcactgtcaatgtgga 312

                                                                       
Query: 121 aataggtggattctcggggctcactaa--------------------ccaatgagatact 160
           |||||||||||||||||||||||||||                    |||||||||||||
Sbjct: 313 aataggtggattctcggggctcactaacctgcttgtcaaggtccaggccaatgagatact 372

                                                                       
Query: 161 ctgacaaaacaaacaaacaaacaaacaaaaaccagctatggctggagagatgactcagct 220
           ||||||||||||||||||            ||||||||||||||||||||||||||||||
Sbjct: 373 ctgacaaaacaaacaaac------------accagctatggctggagagatgactcagct 420

                                                                       
Query: 221 cagttgataaagtgaatgtcaagcaatcatgagaacctgagttcagattcccagcactca 280
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cagttgataaagtgaatgtcaagcaatcatgagaacctgagttcagattcccagcactca 480

                                                                       
Query: 281 caggaaaagccaggcacggtggtgcatgcttgtaatccaggcactgaagaatctgagatg 340
           |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 481 caggaaaagccaggcacggtggtgcacgcttgtaatccaggcactgaagaatccgagatg 540

                                                                       
Query: 341 agaggactcccgacctcactggacagttagtcttgcagaattcgtgcgctccaggatcat 400
           |||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 541 agaggactcctgagctcactggacagttagtcttgcagaattcgtgtgctccaggatcat 600

                                                                       
Query: 401 taagagacactatctaaaaacatggtgaggagcaattgggaagatactcaaggctggcct 460
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 601 taagagacactatctaaaaacatggtggggagcaattgggaagatactcaaggctggcct 660

                                                                       
Query: 461 ctagcctacacagagagagggggcaggaggtagagatagcctctttgccccttacacaat 520
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ctagcctacacagagagagggggcaggaggtagagatagcctctttgccccttacacaat 720

                                                                       
Query: 521 gacacatcacctatggaaaagttggccctcaatgtcatagaaaatgcagcatctgcttct 580
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gacacatcacctatggaaaagttggccctcaatgtcatagaaaatgcagcatctgcttct 780

                                                    
Query: 581 gccttggttggatttcagggtcaaagaaggttataatgttc 621
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gccttggttggatttcagggtcaaagaaggttataatgttc 821


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)