BAC Information

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BAC

Clone NameMSMg01-148F14
Chromosome1 (Build37)
Map Location 29,943,863 - 29,944,404
singlet/doubletsinglet
Overlap genenone
Upstream geneEG623924, EG433283, LOC100040665
Downstream geneLOC665944, EG624138, LOC100040699, Phf3, EG638995
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148F14.T7 (MSMg01no148_f14.b1)MSMg01-148F14.TJ (MSMg01no148_f14.g1)
ACCAG351369AG351370
length721717
length of high quality
(start - end)
346 (69 - 414)540 (73 - 612)
definitionCHROMAT_FILE: MSMg01no148_f14.b1 PHD_FILE: MSMg01no148_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:13 2005CHROMAT_FILE: MSMg01no148_f14.g1 PHD_FILE: MSMg01no148_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAAT
TCTTTGTTCATTCCTGAGCCCCATTTTTAAATGGGATTATTTGATTTTCT
GGAATCCATCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTAT
CTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGATGGTCTTTTT
GTCTTATTGACGGTGTCTTTTGCCTTGTAGAAGCTTTGCAGTTTCATGAG
GTCCCATTTGTCCATTCGCGATCTTACAGCACAAGCTCAATTCTTCAACG
AATTAGAAAGAGCAATCTGCATTTTCATCTGGAATAACAAAAAAACCTAT
GATAGCAAAAACTCTTCTCAAAGATAAAAGAACCTGTGGTGGAATCACCA
TGCCTGATCTAACGCCCCACTACTGAGCAATTGTGTTAAAAACTGCATGG
TACTGGTATACTGACAGACCAGTAGACCAATGGACTATAATTGAAGACCC
AGAAATGAACCCATACACCTATGGTCACTTGATCTTCGACTAGGGAGCCC
AACCATCTAGTGGAAGACAGACAGCATTTTCAACATATGGTGCTGGCACA
ACTGGTTGCTATCATGTACAAGAATGCGAATTGATCCATTCCTTGAAATA
TTTCTACTGTATTATTTATTTACCCCTAATATATCTCTGTTAAATTTGCA
TCTGAATACCTGCATTAATAN
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTGTTCATTTACCCATTACATCATCTG
CTATTCAAATATGTGTGCAGGCCAATCAGTTTTGCAGTCTTTAAAAAAAA
AACTTTTCATAATACTTTAATAGTCTTTGATTTTCAGTGTTTGATTTGTT
GTTTTGAAATTCATCTAATAGTATAAAATCCTGAATTCAAATTATATGAT
GTAATTATTACATACTAATTGCATTTTAGATGACTTTTAAAAGCTTGAAT
TTAATGCATATATATAAAAGATAAATACCTTGTTAATATAAAATAAAATT
ATATGAGAATTACTTAAACTTGGACTATAAATGTAAATTATATTCTTATT
AGCATATTAAACCTCCCCCACCATGGTTCTCAAGATATTTAGGCCTAGCC
ATTAAGCATGTTTATAGCTAGAGTTAATTTTTTAATGAAAACAAAATCTT
TTTATTATTTTTTTTGGTGATTCTAAAAATGAACCTCATTAACCTCCCAA
CAATTATATTAAAAGGAAATTGAGAAATACTGTGGGCAATGCATAAAGAT
TTTATCATGTCCATACAAGTGTCATATATGTATATATACACCCACACACA
TACATAAGGGACTCAAAGAAGATGCTTACACATAATCACTTGGTATTGAT
TAATACCCCTCTTTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_f14.g1 MSMg01no148_f14.g1 CHROMAT_FILE:
MSMg01no148_f14.g1 PHD_FILE: MSMg01no148_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:13 2005
         (540 letters)



>mm_chr1_29943663_29944602
          Length = 940

 Score =  961 bits (497), Expect = 0.0
 Identities = 531/543 (97%), Gaps = 4/543 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgttcatttacccattacatcatctgctattcaaatatgtgtgcaggc-caatcagtt 59
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 201 cttgttcatttacccattacatcatctgctattcaaatatgtgtgcag-ctcaatcagtt 259

                                                                       
Query: 60  ttgcagtctttaaaaaaaaaacttttcataatactttaatagtctttgattttcagtgtt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttgcagtctttaaaaaaaaaacttttcataatactttaatagtctttgattttcagtgtt 319

                                                                       
Query: 120 tgatttgttgttttgaaattcatctaatagtataaaatcctgaattcaaattatatgatg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgatttgttgttttgaaattcatctaatagtataaaatcctgaattcaaattatatgatg 379

                                                                       
Query: 180 taattattacatactaattgcattttagatgacttttaaaagcttgaatttaatgcatat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 taattattacatactaattgcattttagatgacttttaaaagcttgaatttaatgcatat 439

                                                                       
Query: 240 atataaaagataaataccttgttaatataaaataaaattatatgagaattacttaaactt 299
           |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atataaaagagaaatacctagttaatataaaataaaattatatgagaattacttaaactt 499

                                                                       
Query: 300 ggactataaatgtaaattatattcttattagcatattaaacctcccccaccatggttctc 359
           ||||||||||||||||||||||||||||||||||||||||||| |   |  |||||||||
Sbjct: 500 ggactataaatgtaaattatattcttattagcatattaaaccttcagtattatggttctc 559

                                                                       
Query: 360 aagatatttaggcctagccattaagcatgtttatagctagagttaattttttaatgaaaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aagatatttaggcctagccattaagcatgtttatagctagagttaattttttaatgaaaa 619

                                                                       
Query: 420 caaaatctttttattatttttttt--ggtgattctaaaaatgaacctcattaacctccca 477
           ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 620 caaaatctttttattattttttttttggtgattctaaaaatgaacctcattaacctccca 679

                                                                       
Query: 478 acaattatattaaaaggaaattgagaaatactgtgggcaatgcataaagattttatcatg 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 acaattatattaaaaggaaattgagaaatactgtgggcaatgcataaagattttatcatg 739

              
Query: 538 tcc 540
           |||
Sbjct: 740 tcc 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)